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<ol start="1"> | <ol start="1"> | ||
| − | <li>[[Lecture_01|Organisation and Orientation]] (Monday, Sept. 11) | + | <li>[[Lecture_01|Organisation and Orientation]] (Boris, Monday, Sept. 11)<br> |
| + | [[Assignment_1|'''First Assignment''']] handed out | ||
</ol> | </ol> | ||
| + | |||
;Sequences | ;Sequences | ||
<ol start="2"> | <ol start="2"> | ||
| − | <li>[[Lecture_02|Sequence Properties]] (Thursday, Sept. 14) | + | <li>[[Lecture_02|Sequence Properties]] (Boris, Thursday, Sept. 14) |
| − | <li>[[Lecture_03|Databases]] (Monday, Sept. 18) | + | <li>[[Lecture_03|Databases]] (Boris, Monday, Sept. 18) |
| − | <li>[[Lecture_04|Sequence Analysis]] (Thursday, Sept. 21) | + | <li>[[Lecture_04|Sequence Analysis]] (Boris, Thursday, Sept. 21) |
| − | <li>[[Lecture_05|Homology I: the principles]] (Monday, Sept. 25) | + | <li>[[Lecture_05|Homology I: the principles]] (Boris, Monday, Sept. 25)<br> |
| − | <li>[[Lecture_06|Homology I: Sequence Alignment]] (Thursday, Sept. 28) | + | [[Assignment_2|'''Second Assignment''']] handed out |
| + | <li>[[Lecture_06|Homology I: Sequence Alignment]] (Boris, Thursday, Sept. 28) | ||
</ol> | </ol> | ||
;Genomes | ;Genomes | ||
<ol start="7"> | <ol start="7"> | ||
| − | <li>[[Lecture_07|Fast Sequence Database searches]] (Monday, Oct. 2) | + | <li>[[Lecture_07|Fast Sequence Database searches]] (Boris, Monday, Oct. 2) |
| − | <li>[[Lecture_08|Genome Sequencing]] (Thursday, Oct. 5) | + | <li>[[Lecture_08|Genome Sequencing]] (John, Thursday, Oct. 5) |
| − | <li>[[Lecture_09|Genomes]] (Monday, Oct. 9) | + | <li>[[Lecture_09|Genomes]] (John, Monday, Oct. 9)<br> |
| − | <li>[[Lecture_10|Functional Annotation]] (Thursday, Oct. 12) | + | [[Assignment_3|'''Third Assignment''']] handed out |
| − | <li>[[Lecture_11|Clinical Genomics]] (Monday, Oct. 16) | + | <li>[[Lecture_10|Functional Annotation]] (John, Thursday, Oct. 12) |
| + | <li>[[Lecture_11|Clinical Genomics]] (NN, Monday, Oct. 16) | ||
</ol> | </ol> | ||
;Evolution | ;Evolution | ||
<ol start="12"> | <ol start="12"> | ||
| − | <li>[[Lecture_12|Multiple Sequence Alignment]] (Thursday, Oct. 19) | + | <li>[[Lecture_12|Multiple Sequence Alignment]] (Boris, Thursday, Oct. 19) |
| − | <li>[[Lecture_13|Phylogenetic Analysis]] (Monday, Oct. 23) | + | <li>[[Lecture_13|Phylogenetic Analysis]] (Elisabeth Tillier?, Monday, Oct. 23)<br> |
| − | <li>[[Lecture_14|Comparative Genomics]] (Thursday, Oct. 26) | + | [[Assignment_4|'''Fourth Assignment''']] handed out |
| + | <li>[[Lecture_14|Comparative Genomics]] (John, Thursday, Oct. 26) | ||
</ol> | </ol> | ||
;Structures | ;Structures | ||
<ol start="15"> | <ol start="15"> | ||
| − | <li>[[Lecture_15|Protein Structure Databases]] (Monday, Oct. 30) | + | <li>[[Lecture_15|Protein Structure Databases]] (Shoshana, Monday, Oct. 30) |
| − | <li>[[Lecture_18|Structural Domains]] (Thursday, Nov. 2) | + | <li>[[Lecture_18|Structural Domains]] (Shoshana, Thursday, Nov. 2) |
| − | <li>[[Lecture_17|Interpreting Protein Structure]] (Monday, Nov. 6) | + | <li>[[Lecture_17|Interpreting Protein Structure]] (Shoshana, Monday, Nov. 6)<br> |
| − | <li>[[Lecture_16|Homology Modeling]] (Thursday, Nov. 9) | + | [[Assignment_5|'''Fifth Assignment''']] handed out |
| − | <li>[[Lecture_19|Protein Structure Prediction]] (Monday, Nov. 13) | + | <li>[[Lecture_16|Homology Modeling]] (Boris, Thursday, Nov. 9) |
| + | <li>[[Lecture_19|Protein Structure Prediction]] (Boris, Monday, Nov. 13) | ||
</ol> | </ol> | ||
;Systems | ;Systems | ||
<ol start="20"> | <ol start="20"> | ||
| − | <li>[[Lecture_20|Gene regulation]] (Thursday, Nov. 16) | + | <li>[[Lecture_20|Gene regulation]] (Shoshana, Thursday, Nov. 16) |
| − | <li>[[Lecture_21|Classification and Clustering]] (Monday, Nov. 20) | + | <li>[[Lecture_21|Classification and Clustering]] (Quaid Morris?, Monday, Nov. 20)<br> |
| − | <li>[[Lecture_22|Expression Analysis]] (Thursday, Nov. 23) | + | [[Assignment_6|'''Sixth Assignment''']] handed out |
| − | <li>[[Lecture_25|Proteomics]] (Monday, Nov. 27) | + | <li>[[Lecture_22|Expression Analysis]] (Tim Hughes?, Thursday, Nov. 23) |
| − | <li>[[Lecture_23|Interaction Databases]] (Thursday, Nov. 30) | + | <li>[[Lecture_25|Proteomics]] (Andrew Emili?, Monday, Nov. 27) |
| − | <li>[[Lecture_24|Pathways and Networks]] (Monday, Dec. 4) | + | <li>[[Lecture_23|Interaction Databases]] (Gary, Thursday, Nov. 30) |
| − | <li>[[Lecture_26|Computational Systems Biology]] (Thursday, Dec. 8) | + | <li>[[Lecture_24|Pathways and Networks]] (Gary, Monday, Dec. 4) |
| + | <li>[[Lecture_26|Computational Systems Biology]] (Gary, Thursday, Dec. 8) | ||
</ol> | </ol> | ||
Revision as of 17:48, 12 August 2006
Welcome to the BCH441 Course Wiki, our tool to coordinate information, activities and projects.
You can browse all pages on this site, however you need to register if you want to contribute or edit material.
Before you register to create or edit pages, please consider whether this is the right Wiki site for you to work on. If you are here because you are interested in general aspects of bioinformatics or computational biology, you may want to review the Wikipedia article on bioinformatics, or visit Wikiomics. If you are not a lecturer of this course, your edits may not be considered helpful and possibly may be removed. Contact boris.steipe(at)utoronto.ca with any questions you may have.
Organization
The first lecture of the 2006 Fall term will be held Sept. 11, 12:00.
- Dates
- Monday and Thursday, 12:00 to 13:00
- A tutorial session for Bioinformatics and Computational Biology Specialists will be offered Mondays, from 13:00 to 14:00.
- Location
- MSB 2173
See the Course Web page for information.
Schedule
- Organisation and Orientation (Boris, Monday, Sept. 11)
First Assignment handed out
- Sequences
- Sequence Properties (Boris, Thursday, Sept. 14)
- Databases (Boris, Monday, Sept. 18)
- Sequence Analysis (Boris, Thursday, Sept. 21)
- Homology I: the principles (Boris, Monday, Sept. 25)
Second Assignment handed out - Homology I: Sequence Alignment (Boris, Thursday, Sept. 28)
- Genomes
- Fast Sequence Database searches (Boris, Monday, Oct. 2)
- Genome Sequencing (John, Thursday, Oct. 5)
- Genomes (John, Monday, Oct. 9)
Third Assignment handed out - Functional Annotation (John, Thursday, Oct. 12)
- Clinical Genomics (NN, Monday, Oct. 16)
- Evolution
- Multiple Sequence Alignment (Boris, Thursday, Oct. 19)
- Phylogenetic Analysis (Elisabeth Tillier?, Monday, Oct. 23)
Fourth Assignment handed out - Comparative Genomics (John, Thursday, Oct. 26)
- Structures
- Protein Structure Databases (Shoshana, Monday, Oct. 30)
- Structural Domains (Shoshana, Thursday, Nov. 2)
- Interpreting Protein Structure (Shoshana, Monday, Nov. 6)
Fifth Assignment handed out - Homology Modeling (Boris, Thursday, Nov. 9)
- Protein Structure Prediction (Boris, Monday, Nov. 13)
- Systems
- Gene regulation (Shoshana, Thursday, Nov. 16)
- Classification and Clustering (Quaid Morris?, Monday, Nov. 20)
Sixth Assignment handed out - Expression Analysis (Tim Hughes?, Thursday, Nov. 23)
- Proteomics (Andrew Emili?, Monday, Nov. 27)
- Interaction Databases (Gary, Thursday, Nov. 30)
- Pathways and Networks (Gary, Monday, Dec. 4)
- Computational Systems Biology (Gary, Thursday, Dec. 8)
Resources
Course Wiki
- Introduction: Concept and contents of the Course Wiki
- Soapbox: A page to commmunicate. Do you want to leave a message? Alert the course members? Voice an opinion? Praise or flame? Use this page.
- Editing: Editing principles and Wiki markup syntax for the Course Wiki pages
- Sandbox: A page for your editing experiments. Content added to this page will not stay permanently.
- Feedback: Share your views on the course, suggest improvements.
Course Web
- The Course Web site.
