Main Page
Welcome to the BCH441 Course Wiki, our tool to coordinate information, activities and projects.
You can browse all pages on this site, however you need to register if you want to contribute or edit material.
Before you register to create or edit pages, please consider whether this is the right Wiki site for you to work on. If you are here because you are interested in general aspects of bioinformatics or computational biology, you may want to review the Wikipedia article on bioinformatics, or visit Wikiomics. If you are not a lecturer of this course, your edits may not be considered helpful and possibly may be removed. Contact boris.steipe(at)utoronto.ca with any questions you may have.
Organization
The first lecture of the 2006 Fall term will be held Sept. 11, 12:00.
- Dates
- Monday and Thursday, 12:00 to 13:00
- A tutorial session for Bioinformatics and Computational Biology Specialists will be offered Mondays, from 13:00 to 14:00.
- Location
- MSB 2173
See the Course Web page for information.
Schedule
(This is a preliminary schedule and changes may be made as the course progresses.)
- Organisation and Orientation (Boris, Monday, Sept. 11)
First Assignment handed out
- Sequences
- The Sequence Abstraction (Boris, Thursday, Sept. 14)
- Sequence Properties (Boris, Monday, Sept. 18)
- Sequence Analysis (Boris, Thursday, Sept. 21)
- Homology I: the principles (Boris, Monday, Sept. 25)
Second Assignment handed out - Homology I: Sequence Alignment (Boris, Thursday, Sept. 28)
- Genomes
- Fast Sequence Database searches (Boris, Monday, Oct. 2)
- Genome Sequencing (John, Thursday, Oct. 5)
- Genomes (John, Monday, Oct. 9)
Third Assignment handed out - Functional Annotation (John, Thursday, Oct. 12)
- Clinical Genomics (NN, Monday, Oct. 16)
- Evolution
- Multiple Sequence Alignment (Boris, Thursday, Oct. 19)
- Phylogenetic Analysis (Elisabeth Tillier?, Monday, Oct. 23)
Fourth Assignment handed out - Comparative Genomics (John, Thursday, Oct. 26)
- Structures
- Protein Structure Databases (Shoshana, Monday, Oct. 30)
- Structural Domains (Shoshana, Thursday, Nov. 2)
- Interpreting Protein Structure (Shoshana, Monday, Nov. 6)
Fifth Assignment handed out - Homology Modeling (Boris, Thursday, Nov. 9)
- Protein Structure Prediction (Boris, Monday, Nov. 13)
- Systems
- Gene regulation (Shoshana, Thursday, Nov. 16)
- Machine Learning: Classification and Clustering (Gary, Monday, Nov. 20)
Sixth Assignment handed out - Expression Analysis (Tim Hughes?, Thursday, Nov. 23)
- Proteomics (Andrew Emili?, Monday, Nov. 27)
- Interaction Databases (Gary, Thursday, Nov. 30)
- Pathways and Networks (Gary, Monday, Dec. 4)
- Computational Systems Biology (Gary, Thursday, Dec. 8)
Resources
Course Wiki
- Introduction: Concept and contents of the Course Wiki
- Soapbox: A page to commmunicate. Do you want to leave a message? Alert the course members? Voice an opinion? Praise or flame? Use this page.
- Editing: Editing principles and Wiki markup syntax for the Course Wiki pages
- Sandbox: A page for your editing experiments. Content added to this page will not stay permanently.
- Feedback: Share your views on the course, suggest improvements.
Course Web
- The Course Web site.
