Difference between revisions of "Main Page"
Jump to navigation
Jump to search
| Line 31: | Line 31: | ||
<li>[[Lecture_03|Sequence Properties]] (Boris, Monday, Sept. 18) | <li>[[Lecture_03|Sequence Properties]] (Boris, Monday, Sept. 18) | ||
<li>[[Lecture_04|Sequence Analysis]] (Boris, Thursday, Sept. 21) | <li>[[Lecture_04|Sequence Analysis]] (Boris, Thursday, Sept. 21) | ||
| − | <li>[[Lecture_05|Homology I: the principles]] (Boris, Monday, Sept. 25)<li>[[Lecture_06|Homology II: Sequence Alignment]] (Boris, Thursday, Sept. 28) | + | <li>[[Lecture_05|Homology I: the principles]] (Boris, Monday, Sept. 25) |
| + | <li>[[Lecture_06|Homology II: Sequence Alignment]] (Boris, Thursday, Sept. 28) | ||
</ol> | </ol> | ||
;Structures | ;Structures | ||
<ol start="7"> | <ol start="7"> | ||
<li>[[Lecture_07|Protein Structure Databases]] (Boris, Monday, Oct. 2) | <li>[[Lecture_07|Protein Structure Databases]] (Boris, Monday, Oct. 2) | ||
| − | <li>[[Lecture_08|Structural Domains]] (Boris, Thursday, Oct. 5) | + | <li>[[Lecture_08|Structural Domains]] (Boris, Thursday, Oct. 5)<br> |
| − | <br> | ||
[[Assignment_2|'''Second Assignment''']] handed out | [[Assignment_2|'''Second Assignment''']] handed out | ||
<li>[[Lecture_09|Interpreting Protein Structure]] (Boris, Monday, Oct. 9) | <li>[[Lecture_09|Interpreting Protein Structure]] (Boris, Monday, Oct. 9) | ||
<li>[[Lecture_10|Homology Modeling]] (Boris, Thursday, Oct. 12) | <li>[[Lecture_10|Homology Modeling]] (Boris, Thursday, Oct. 12) | ||
| − | <li>[[Lecture_11|Protein Structure Prediction]] (Boris, Monday, Oct. 16)<br> | + | <li>[[Lecture_11|Protein Structure Prediction]] (Boris, Monday, Oct. 16) |
| + | <li>[[Lecture_12|Multiple Sequence Alignment]] (Boris, Thursday, Oct. 19)<br> | ||
[[Assignment_3|'''Third Assignment''']] handed out | [[Assignment_3|'''Third Assignment''']] handed out | ||
</ol> | </ol> | ||
;Genomes | ;Genomes | ||
| − | <ol start=" | + | <ol start="13"> |
| − | |||
<li>[[Lecture_13|Genome Sequencing]] (John, Monday, Oct. 23) | <li>[[Lecture_13|Genome Sequencing]] (John, Monday, Oct. 23) | ||
<li>[[Lecture_14|Genomes]] (John, Thursday, Oct. 26) | <li>[[Lecture_14|Genomes]] (John, Thursday, Oct. 26) | ||
<li>[[Lecture_15|Functional Annotation]] (John, Monday, Oct. 30)<br> | <li>[[Lecture_15|Functional Annotation]] (John, Monday, Oct. 30)<br> | ||
[[Assignment_4|'''Fourth Assignment''']] handed out | [[Assignment_4|'''Fourth Assignment''']] handed out | ||
| − | <li>[[Lecture_16|Clinical Genomics]] (NN, | + | <li>[[Lecture_16|Clinical Genomics]] (NN, Monday, Nov. 6)<br> |
</ol> | </ol> | ||
;Evolution | ;Evolution | ||
<ol start="17"> | <ol start="17"> | ||
| − | <li>[[Lecture_17| | + | <li>[[Lecture_17|Fast Sequence Database searches]] (Boris, Thursday, Nov. 2) |
| + | <li>[[Lecture_18|Phylogenetic Analysis]] (Boris, Thursday, Nov. 9)<br> | ||
[[Assignment_5|'''Fifth Assignment''']] handed out | [[Assignment_5|'''Fifth Assignment''']] handed out | ||
| − | |||
<li>[[Lecture_19|Comparative Genomics]] (John, Monday, Nov.13) | <li>[[Lecture_19|Comparative Genomics]] (John, Monday, Nov.13) | ||
</ol> | </ol> | ||
;Systems | ;Systems | ||
<ol start="20"> | <ol start="20"> | ||
| − | <li>[[Lecture_20| | + | <li>[[Lecture_20|Expression Analysis]] (Tim Hughes?, Thursday, Nov. 16) |
| − | <li>[[Lecture_21| | + | <li>[[Lecture_21| Proteomics]] (Andrew Emili?, Monday, Nov. 20)<br> |
[[Assignment_6|'''Sixth Assignment''']] handed out | [[Assignment_6|'''Sixth Assignment''']] handed out | ||
| − | <li>[[Lecture_22| | + | <li>[[Lecture_22|Gene regulation]] (Shoshana, Thursday, Nov. 23) |
| − | <li>[[Lecture_23| | + | <li>[[Lecture_23|Machine Learning: Classification and Clustering]] (Shoshana, Monday, Nov. 27) |
<li>[[Lecture_24|Interaction Databases]] (Shoshana, Thursday, Nov. 30) | <li>[[Lecture_24|Interaction Databases]] (Shoshana, Thursday, Nov. 30) | ||
| − | <li>[[Lecture_25|Pathways and Networks]] ( | + | <li>[[Lecture_25|Pathways and Networks]] (Gary Bader, Monday, Dec. 4) |
| − | <li>[[Lecture_26|Computational Systems Biology]] ( | + | <li>[[Lecture_26|Computational Systems Biology]] (John, Thursday, Dec. 8) |
</ol> | </ol> | ||
Revision as of 19:12, 18 October 2006
Welcome to the BCH441 Course Wiki, our tool to coordinate information, activities and projects.
You can browse all pages on this site, however only users with a login account can edit or contribute or edit material.
If you are here because you are interested in general aspects of bioinformatics or computational biology, you may want to review the Wikipedia article on bioinformatics, or visit Wikiomics. Contact boris.steipe(at)utoronto.ca with any questions you may have.
Contents
Organization
The first lecture of the 2006 Fall term will be held Sept. 11, 12:00.
- Dates
- Monday and Thursday, 12:00 to 13:00
- A tutorial session for Bioinformatics and Computational Biology Specialists will be offered Mondays, from 13:00 to 14:00.
- Location
- MSB 2173
See the Course Web page for information.
Schedule
(This is a preliminary schedule and changes may be made as the course progresses.)
- Organisation and Orientation (Boris, Monday, Sept. 11)
First Assignment handed out
- Sequences
- The Sequence Abstraction (Boris, Thursday, Sept. 14)
- Sequence Properties (Boris, Monday, Sept. 18)
- Sequence Analysis (Boris, Thursday, Sept. 21)
- Homology I: the principles (Boris, Monday, Sept. 25)
- Homology II: Sequence Alignment (Boris, Thursday, Sept. 28)
- Structures
- Protein Structure Databases (Boris, Monday, Oct. 2)
- Structural Domains (Boris, Thursday, Oct. 5)
Second Assignment handed out - Interpreting Protein Structure (Boris, Monday, Oct. 9)
- Homology Modeling (Boris, Thursday, Oct. 12)
- Protein Structure Prediction (Boris, Monday, Oct. 16)
- Multiple Sequence Alignment (Boris, Thursday, Oct. 19)
Third Assignment handed out
- Genomes
- Genome Sequencing (John, Monday, Oct. 23)
- Genomes (John, Thursday, Oct. 26)
- Functional Annotation (John, Monday, Oct. 30)
Fourth Assignment handed out - Clinical Genomics (NN, Monday, Nov. 6)
- Evolution
- Fast Sequence Database searches (Boris, Thursday, Nov. 2)
- Phylogenetic Analysis (Boris, Thursday, Nov. 9)
Fifth Assignment handed out - Comparative Genomics (John, Monday, Nov.13)
- Systems
- Expression Analysis (Tim Hughes?, Thursday, Nov. 16)
- Proteomics (Andrew Emili?, Monday, Nov. 20)
Sixth Assignment handed out - Gene regulation (Shoshana, Thursday, Nov. 23)
- Machine Learning: Classification and Clustering (Shoshana, Monday, Nov. 27)
- Interaction Databases (Shoshana, Thursday, Nov. 30)
- Pathways and Networks (Gary Bader, Monday, Dec. 4)
- Computational Systems Biology (John, Thursday, Dec. 8)
In depth...
Resources
Course Wiki
- Introduction: Concept and contents of the Course Wiki
- Soapbox: A page to commmunicate. Do you want to leave a message? Alert the course members? Voice an opinion? Praise or flame? Use this page.
- Editing: Editing principles and Wiki markup syntax for the Course Wiki pages
- Sandbox: A page for your editing experiments. Content added to this page will not stay permanently.
- Feedback: Share your views on the course, suggest improvements.
Course Web
- The Course Web site.
