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See the [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Course Web page] for information. | See the [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Course Web page] for information. | ||
| − | == Schedule == | + | == Lecture Schedule == |
<small>(This is a preliminary schedule and changes may be made as the course progresses.)</small> | <small>(This is a preliminary schedule and changes may be made as the course progresses.)</small> | ||
<ol start="1"> | <ol start="1"> | ||
| − | <li>[[Lecture_01|Organisation and Orientation]] (Boris, Monday, Sept. 11) | + | <li>[[Lecture_01|Organisation and Orientation]] (Boris, Monday, Sept. 11) |
| − | |||
</ol> | </ol> | ||
| Line 37: | Line 36: | ||
<ol start="7"> | <ol start="7"> | ||
<li>[[Lecture_07|Protein Structure Databases]] (Boris, Monday, Oct. 2) | <li>[[Lecture_07|Protein Structure Databases]] (Boris, Monday, Oct. 2) | ||
| − | <li>[[Lecture_08|Structural Domains]] (Boris, Thursday, Oct. 5) | + | <li>[[Lecture_08|Structural Domains]] (Boris, Thursday, Oct. 5) |
| − | |||
<li>[[Lecture_09|Interpreting Protein Structure]] (Boris, Monday, Oct. 9) | <li>[[Lecture_09|Interpreting Protein Structure]] (Boris, Monday, Oct. 9) | ||
<li>[[Lecture_10|Homology Modeling]] (Boris, Thursday, Oct. 12) | <li>[[Lecture_10|Homology Modeling]] (Boris, Thursday, Oct. 12) | ||
| Line 49: | Line 47: | ||
<li>[[Lecture_14|Genomes]] (John, Thursday, Oct. 26) | <li>[[Lecture_14|Genomes]] (John, Thursday, Oct. 26) | ||
<li>[[Lecture_15|Functional Annotation]] (Shoshana, Monday, Oct. 30) | <li>[[Lecture_15|Functional Annotation]] (Shoshana, Monday, Oct. 30) | ||
| − | <li>[[Lecture_16|Fast Sequence Database searches]] (Boris, Thursday, Nov. 2) | + | <li>[[Lecture_16|Fast Sequence Database searches]] (Boris, Thursday, Nov. 2) |
| − | |||
</ol> | </ol> | ||
;Evolution | ;Evolution | ||
<ol start="17"> | <ol start="17"> | ||
<li>[[Lecture_17|Phylogenetic Analysis]] (Boris, Monday, Nov. 6) | <li>[[Lecture_17|Phylogenetic Analysis]] (Boris, Monday, Nov. 6) | ||
| − | <li>[[Lecture_18|Clinical Genomics]] (Boris, Thursday, Nov. 9) | + | <li>[[Lecture_18|Clinical Genomics]] (Boris, Thursday, Nov. 9) |
| − | |||
<li>[[Lecture_19|Comparative Genomics]] (John, Monday, Nov.13) | <li>[[Lecture_19|Comparative Genomics]] (John, Monday, Nov.13) | ||
</ol> | </ol> | ||
;Systems | ;Systems | ||
<ol start="20"> | <ol start="20"> | ||
| − | <li>[[Lecture_20|Expression Analysis]] (Tim Hughes?, Thursday, Nov. 16) | + | <li>[[Lecture_20|Expression Analysis]] (Tim Hughes?, Thursday, Nov. 16) |
| − | |||
<li>[[Lecture_21| Proteomics]] (Andrew Emili?, Monday, Nov. 20) | <li>[[Lecture_21| Proteomics]] (Andrew Emili?, Monday, Nov. 20) | ||
<li>[[Lecture_22|Gene regulation]] (Shoshana, Thursday, Nov. 23) | <li>[[Lecture_22|Gene regulation]] (Shoshana, Thursday, Nov. 23) | ||
| − | <li>[[Lecture_23|Machine Learning: Classification and Clustering]] (Shoshana, Monday, Nov. 27) | + | <li>[[Lecture_23|Machine Learning: Classification and Clustering]] (Shoshana, Monday, Nov. 27) |
| − | |||
<li>[[Lecture_24|Interaction Databases]] (Shoshana, Thursday, Nov. 30) | <li>[[Lecture_24|Interaction Databases]] (Shoshana, Thursday, Nov. 30) | ||
<li>[[Lecture_25|Pathways and Networks]] (Gary Bader, Monday, Dec. 4) | <li>[[Lecture_25|Pathways and Networks]] (Gary Bader, Monday, Dec. 4) | ||
<li>[[Lecture_26|Computational Systems Biology]] (John, Thursday, Dec. 8) | <li>[[Lecture_26|Computational Systems Biology]] (John, Thursday, Dec. 8) | ||
</ol> | </ol> | ||
| + | |||
| + | == Assignments == | ||
| + | <br> | ||
| + | *[[Assignment_1|'''First Assignment''' - Databases and Molecular Models]] | ||
| + | *[[Assignment_2|'''Second Assignment''' - Search, Retrieve and Annotate]] | ||
| + | *[[Assignment_3|'''Third Assignment''' - Multiple Sequence Alignment]] | ||
| + | *[[Assignment_4|'''Fourth Assignment''' - Phylogenetic Analysis]] | ||
| + | *[[Assignment_5|'''Fifth Assignment''' - Homology Modeling]] | ||
| + | *[[Assignment_6|'''Sixth Assignment''' - Patterns, Regulons and Systems]] | ||
==In depth...== | ==In depth...== | ||
Revision as of 01:33, 9 November 2006
Welcome to the BCH441 Course Wiki, our tool to coordinate information, activities and projects.
You can browse all pages on this site, however only users with a login account can edit or contribute or edit material.
If you are here because you are interested in general aspects of bioinformatics or computational biology, you may want to review the Wikipedia article on bioinformatics, or visit Wikiomics. Contact boris.steipe(at)utoronto.ca with any questions you may have.
Organization
The first lecture of the 2006 Fall term will be held Sept. 11, 12:00.
- Dates
- Monday and Thursday, 12:00 to 13:00
- A tutorial session for Bioinformatics and Computational Biology Specialists will be offered Mondays, from 13:00 to 14:00.
- Location
- MSB 2173
See the Course Web page for information.
Lecture Schedule
(This is a preliminary schedule and changes may be made as the course progresses.)
- Organisation and Orientation (Boris, Monday, Sept. 11)
- Sequences
- The Sequence Abstraction (Boris, Thursday, Sept. 14)
- Sequence Properties (Boris, Monday, Sept. 18)
- Sequence Analysis (Boris, Thursday, Sept. 21)
- Homology I: the principles (Boris, Monday, Sept. 25)
- Homology II: Sequence Alignment (Boris, Thursday, Sept. 28)
- Structures
- Protein Structure Databases (Boris, Monday, Oct. 2)
- Structural Domains (Boris, Thursday, Oct. 5)
- Interpreting Protein Structure (Boris, Monday, Oct. 9)
- Homology Modeling (Boris, Thursday, Oct. 12)
- Protein Structure Prediction (Boris, Monday, Oct. 16)
- Multiple Sequence Alignment (Boris, Thursday, Oct. 19)
- Genomes
- Genome Sequencing (John, Monday, Oct. 23)
- Genomes (John, Thursday, Oct. 26)
- Functional Annotation (Shoshana, Monday, Oct. 30)
- Fast Sequence Database searches (Boris, Thursday, Nov. 2)
- Evolution
- Phylogenetic Analysis (Boris, Monday, Nov. 6)
- Clinical Genomics (Boris, Thursday, Nov. 9)
- Comparative Genomics (John, Monday, Nov.13)
- Systems
- Expression Analysis (Tim Hughes?, Thursday, Nov. 16)
- Proteomics (Andrew Emili?, Monday, Nov. 20)
- Gene regulation (Shoshana, Thursday, Nov. 23)
- Machine Learning: Classification and Clustering (Shoshana, Monday, Nov. 27)
- Interaction Databases (Shoshana, Thursday, Nov. 30)
- Pathways and Networks (Gary Bader, Monday, Dec. 4)
- Computational Systems Biology (John, Thursday, Dec. 8)
Assignments
- First Assignment - Databases and Molecular Models
- Second Assignment - Search, Retrieve and Annotate
- Third Assignment - Multiple Sequence Alignment
- Fourth Assignment - Phylogenetic Analysis
- Fifth Assignment - Homology Modeling
- Sixth Assignment - Patterns, Regulons and Systems
In depth...
Resources
Course Wiki
- Introduction: Concept and contents of the Course Wiki
- Soapbox: A page to commmunicate. Do you want to leave a message? Alert the course members? Voice an opinion? Praise or flame? Use this page.
- Editing: Editing principles and Wiki markup syntax for the Course Wiki pages
- Sandbox: A page for your editing experiments. Content added to this page will not stay permanently.
- Feedback: Share your views on the course, suggest improvements.
Course Web
- The Course Web site.
