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Contents
1
Hardware
2
Systems and Tools
3
Programming
4
Algorithms
5
Communication and collaboration
6
Statistics
7
Applications
Hardware
High performance computing
Cloud computing
Systems and Tools
Unix
Unix system administration
Unix automation
Program installation
wget
Network Configuration
Apache
MySQL
Tools for the bioinformatics lab
GBrowse and LDAS
Programming
IDE (Integrated Development Environment)
Regular Expressions
Screenscraping
Perl
Perl basic programming
Perl hash example
Perl LWP example
Perl MySQL introduction
Perl OBO parser
Perl basic programming
Perl programming exercises 1
Perl programming exercises 2
Perl programming Data Structures
Perl references
Perl simulation
Perl: Object oriented programming
Perl: Ugly programming
BioPerl
PHP
Relational database principles
BioPython
Graphical output
Autonomous agents
Algorithms
Algorithms on Sequences
Dynamic Programming
Multiple Sequence Alignment
Genome Assembly
Algorithms on Structures
Docking
Protein Structure Prediction
Algorithms on Trees
Computing with trees
Algorithms on Networks
Network metrics
Dijkstras Algorithm
Floyd Warshall Algorithm
Communication and collaboration
MediaWiki
HTML essentials
HTML 5
SADI Semantic Automated Discovery and Integration
CGI
Statistics
Pattern discovery
Correlation
Clustering methods
Cluster metrics
The Map Equation
Machine learning
R
R plotting
R programming
R EDA
R regression
R PCA
R Clustering
R Classification
R hypothesis testing
Bioconductor
Applications
Data integration
Text mining
HMMER
High-throughput sequencing
Functional annotation
Microarray analysis
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