Difference between revisions of "User:Boris/Temp/APB"
< User:Boris | Temp
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| − | ;Principles | + | ;Misc. Principles |
* [[Autonomous agent]] | * [[Autonomous agent]] | ||
* [[Bioinformatics foundations]] | * [[Bioinformatics foundations]] | ||
| + | * [[High Performance Computing]] | ||
| + | * [[Cloud computing]] | ||
| + | * [[Data integration]] | ||
| + | |||
| + | ; Algorithms | ||
* [[Dijkstras Algorithm]] | * [[Dijkstras Algorithm]] | ||
* [[Floyd Warshall Algorithm]] | * [[Floyd Warshall Algorithm]] | ||
* [[APB Functional annotation]] | * [[APB Functional annotation]] | ||
| − | ; | + | ; Tools |
| − | + | * [[Unix]] (installation notes, commands, principles, pipe) | |
| − | + | * [[Unix system administration]] (and security) | |
| − | * [[Unix | + | * [[Unix automation]] shellscripts, cron |
| − | |||
| − | |||
| − | |||
| − | * [[Unix system administration]] | ||
| − | * [[Unix | ||
* [[Unix wget]] | * [[Unix wget]] | ||
| − | * [[ | + | * [[Tools for the bioinformatics lab]] (APB, CLUSTAL, EMBOSS, PHYLIP, T-Coffee, HMMER) |
| − | * [[ | + | * [[Apache]] (serving a local file) |
| − | * [[ | + | * [[MySQL]] (introduction, installation, MariaDB) |
| − | * [[ | + | ** [[Database example]] |
| − | * [[ | + | ** [[Database example-join tables]] |
| − | * [[ | + | ** [[Database example-Perl interface]] |
| − | * [[ | + | ** [[Database example-PHP form interface]] |
| + | ** [[DBI Mac OS X installation notes]] | ||
| + | * [[GBrowse]] (installation notes, viewing annotations, LDAS installation notes, LDAS usage) | ||
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| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
;[[Programming]] | ;[[Programming]] | ||
| − | * [[IDE|IDE (Integrated Development Environment)]] | + | * [[IDE|IDE (Integrated Development Environment)]] (Komodo) |
| − | |||
* [[Regular Expressions]] | * [[Regular Expressions]] | ||
* [[Screenscraping]] | * [[Screenscraping]] | ||
| − | + | * [[Perl]] (installation notes, CPAN, principles, syntax, one liners) | |
| − | + | ** [[Perl basic programing]] | |
| − | * [[Perl basic programing]] | + | ** [[Perl hash example]] |
| − | * [[Perl hash example]] | + | ** [[Perl LWP example]] |
| − | * | + | ** [[Perl MySQL example]] |
| − | * [[Perl LWP example]] | + | ** [[Perl MySQL introduction]] (DBI Mac OSX installation notes) |
| − | * [[Perl MySQL example]] | + | ** [[Perl OBO parser]] |
| − | * [[Perl MySQL introduction]] | + | ** [[Perl programming]] |
| − | * [[Perl OBO parser]] | + | ** [[Perl programming exercises 1]] |
| − | * | + | ** [[Perl programming exercises 2]] |
| − | * [[Perl | + | ** [[Perl programming Data Structures]] |
| − | * | + | ** [[Perl references]] |
| − | * [[Perl programming 1]] | + | ** [[Perl simulation]] |
| − | * [[Perl programming 2]] | + | ** [[Perl retrieve fasta]] |
| − | * [[Perl programming Data Structures]] | + | ** [[Perl/MySQL example]] |
| − | * [[Perl references]] | + | ** [[Perl: Object oriented programming]] |
| − | * [[Perl simulation]] | + | ** [[Perl: Ugly programming]] |
| − | * | + | ** [[Perl: Using forms]] |
| − | * [[Perl retrieve fasta]] | + | * [[BioPerl]] (installation notes, programming, BP run, BP ext, tutorials) |
| − | * [[Perl/MySQL example]] | + | ** [[BioPerl exercise alignment]] |
| − | * | + | ** [[BioPerl exercise restriction]] |
| − | * [[Perl: Object oriented programming]] | + | ** [[BioPerl exercise signal cleavage]] |
| − | * [[Perl: Ugly programming]] | + | * [[PHP]] |
| − | * [[Perl: Using forms]] | ||
| − | |||
| − | |||
| − | * [[ | ||
| − | * [[PHP | ||
;Network, Web and Communication | ;Network, Web and Communication | ||
| Line 74: | Line 62: | ||
* [[Web Communication]] | * [[Web Communication]] | ||
* [[HTML essentials]] | * [[HTML essentials]] | ||
| − | * [[CGI]] | + | * [[CGI]] (introduction, configuring apache, executing a script, query string input) |
| − | |||
| − | |||
| − | |||
| − | |||
* [[Network Analysis]] | * [[Network Analysis]] | ||
* [[Network Configuration]] | * [[Network Configuration]] | ||
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</div> | </div> | ||
Revision as of 22:45, 14 September 2012
- Misc. Principles
- Autonomous agent
- Bioinformatics foundations
- High Performance Computing
- Cloud computing
- Data integration
- Algorithms
- Tools
- Unix (installation notes, commands, principles, pipe)
- Unix system administration (and security)
- Unix automation shellscripts, cron
- Unix wget
- Tools for the bioinformatics lab (APB, CLUSTAL, EMBOSS, PHYLIP, T-Coffee, HMMER)
- Apache (serving a local file)
- MySQL (introduction, installation, MariaDB)
- GBrowse (installation notes, viewing annotations, LDAS installation notes, LDAS usage)
- IDE (Integrated Development Environment) (Komodo)
- Regular Expressions
- Screenscraping
- Perl (installation notes, CPAN, principles, syntax, one liners)
- Perl basic programing
- Perl hash example
- Perl LWP example
- Perl MySQL example
- Perl MySQL introduction (DBI Mac OSX installation notes)
- Perl OBO parser
- Perl programming
- Perl programming exercises 1
- Perl programming exercises 2
- Perl programming Data Structures
- Perl references
- Perl simulation
- Perl retrieve fasta
- Perl/MySQL example
- Perl: Object oriented programming
- Perl: Ugly programming
- Perl: Using forms
- BioPerl (installation notes, programming, BP run, BP ext, tutorials)
- PHP
- Network, Web and Communication
- MediaWiki
- Web Communication
- HTML essentials
- CGI (introduction, configuring apache, executing a script, query string input)
- Network Analysis
- Network Configuration
