Difference between revisions of "User:Boris/Temp/APB"

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===Systems and Tools===
 
===Systems and Tools===
 
<table width="100%">
 
<table width="100%">
<tr class="s1"><td class="l1 mw-collapsible mw-collapsed" data-expandtext="Expand related topics" data-collapsetext="Collapse">[[Unix]]
+
 
 +
<tr class="s1"><td class="l1 mw-collapsible mw-collapsed" data-expandtext="Expand subtopics" data-collapsetext="Collapse">[[Unix]]
 
<div class="mw-collapsible-content">
 
<div class="mw-collapsible-content">
 
<table width="100%"><tr class="s2"><td class="l2">[[Unix system administration]]</td></tr></table>
 
<table width="100%"><tr class="s2"><td class="l2">[[Unix system administration]]</td></tr></table>
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<table width="100%"><tr class="s1"><td class="l2">[[wget]]</td></tr></table>
 
<table width="100%"><tr class="s1"><td class="l2">[[wget]]</td></tr></table>
 
</div>
 
</div>
 +
</td></tr>
  
</td></tr>
 
 
<tr class="s2"><td class="l1">[[Network Configuration]]</td></tr>
 
<tr class="s2"><td class="l1">[[Network Configuration]]</td></tr>
 
<tr class="s1"><td class="l1">[[Apache]]</td></tr>
 
<tr class="s1"><td class="l1">[[Apache]]</td></tr>
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<tr class="s1"><td class="l1">[[Screenscraping]]</td></tr>
 
<tr class="s1"><td class="l1">[[Screenscraping]]</td></tr>
  
<tr class="s2"><td class="l1 mw-collapsible mw-collapsed" data-expandtext="Expand related topics" data-collapsetext="Collapse">[[Perl]]
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<tr class="s2"><td class="l1 mw-collapsible mw-collapsed" data-expandtext="Expand subtopics" data-collapsetext="Collapse">[[Perl]]
 
<div class="mw-collapsible-content">
 
<div class="mw-collapsible-content">
 
<table width="100%"><tr class="s1"><td class="l2">[[Perl basic programming]]</td></tr></table>
 
<table width="100%"><tr class="s1"><td class="l2">[[Perl basic programming]]</td></tr></table>
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</div>
 
</div>
 
</td></tr>
 
</td></tr>
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<tr class="s1"><td class="l1">[[BioPerl]]</td></tr>
 
<tr class="s1"><td class="l1">[[BioPerl]]</td></tr>
 
<tr class="s2"><td class="l1">[[PHP]]</td></tr>
 
<tr class="s2"><td class="l1">[[PHP]]</td></tr>
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<tr class="s1"><td class="l1">[[Map equation|The Map Equation]] </td></tr>
 
<tr class="s1"><td class="l1">[[Map equation|The Map Equation]] </td></tr>
 
<tr class="s2"><td class="l1">Machine learning <!-- (Classification problems: Neural Networks, HMMs, SVM..) --></td></tr>
 
<tr class="s2"><td class="l1">Machine learning <!-- (Classification problems: Neural Networks, HMMs, SVM..) --></td></tr>
<tr class="s1"><td class="l1 mw-collapsible mw-collapsed" data-expandtext="Expand related topics" data-collapsetext="Collapse">[[R]]
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 +
<tr class="s1"><td class="l1 mw-collapsible mw-collapsed" data-expandtext="Expand subtopics" data-collapsetext="Collapse">[[R]]
 
<div class="mw-collapsible-content">
 
<div class="mw-collapsible-content">
 
<table width="100%"><tr class="s2"><td class="l2">R plotting</td></tr></table>
 
<table width="100%"><tr class="s2"><td class="l2">R plotting</td></tr></table>
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<table width="100%"><tr class="s1"><td class="l2">R hypothesis testing</td></tr></table>
 
<table width="100%"><tr class="s1"><td class="l2">R hypothesis testing</td></tr></table>
 
<table width="100%"><tr class="s2"><td class="l2">[[Bioconductor]]</td></tr></table>
 
<table width="100%"><tr class="s2"><td class="l2">[[Bioconductor]]</td></tr></table>
<table width="100%"><tr class="s1"><td class="l2"></td></tr></table>
 
<table width="100%"><tr class="s2"><td class="l2"></td></tr></table>
 
<table width="100%"><tr class="s1"><td class="l2"></td></tr></table>
 
 
</div>
 
</div>
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</td></tr>
 +
 
<tr><td class="sp">&nbsp;</td></tr>
 
<tr><td class="sp">&nbsp;</td></tr>
 
</table>
 
</table>

Revision as of 15:56, 19 September 2012

 

Hardware

High performance computing
Cloud computing
 

Systems and Tools

Unix
Network Configuration
Apache
MySQL
Tools for the bioinformatics lab
GBrowse and LDAS
 

Programming

IDE (Integrated Development Environment)
Regular Expressions
Screenscraping
Perl
BioPerl
PHP
Relational database principles
BioPython
Graphical output
Autonomous agents

Algorithms

Algorithms on Sequences
Dynamic Programming
Multiple Sequence Alignment
Genome Assembly
 
Algorithms on Structures
Docking
Protein Structure Prediction
 
Algorithms on Trees
Computing with trees
 
Algorithms on Networks
Network metrics
Dijkstras Algorithm
Floyd Warshall Algorithm


Communication and collaboration

MediaWiki
HTML essentials
HTML 5
SADI Semantic Automated Discovery and Integration
CGI
 

Statistics

Pattern discovery
Correlation
Clustering methods
Cluster metrics
The Map Equation
Machine learning
R
R plotting
R programming
R EDA
R regression
R PCA
R Clustering
R Classification
R hypothesis testing
Bioconductor
 

Applications

Data integration
Text mining
HMMER
High-throughput sequencing
Functional annotation
Microarray analysis