Expected Preparations:

  Biomolecules:
The molecules of life; The genetic code; Nucleic acids; Amino acids; Protein folding; Post-translational modifications and protein biochemistry; Membrane proteins; Biological function.
   [RPR]
Biostrings 		  [RPR]
RegEx 		 
  If you are not already familiar with the prior knowledge listed above, you need to prepare yourself from other information sources.   The units listed above are part of this course and contain important preparatory material.  
Keywords: constitution concatenation comparison correspondence conservation composition collaboration; Web-services; analysis tools; bioinformatics.ca
Objectives:

This unit will …

  • … introduce a typology of sequence analysis strategies;

  • … discuss sound principles for developin sequence analysis experiments;

  • … showcase some access points to sequence analysis tools in common use.

 Outcomes:

After working through this unit you …

  • … are familar with how sequence analysis strategies can be organized;

  • … can critically evaluate your own sequence analysis experiments for completeness, soundness, and whether they can be extended;

  • … are familar with common access points to bioinformatics tools.

Deliverables:

Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.

Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don’t overlook these.

Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.

Evaluation:

NA: This unit is not evaluated for course marks.

Contents

This unit introduces a typology of sequence analysis strategies and presents common access points to sequence analysis tools.

Task…

 

Questions, comments

If in doubt, ask! If anything about this contents is not clear to you, do not proceed but ask for clarification. If you have ideas about how to make this material better, let’s hear them. We are aiming to compile a list of FAQs for all learning units, and your contributions will count towards your participation marks.

Improve this page! If you have questions or comments, please post them on the Quercus Discussion board with a subject line that includes the name of the unit.

References

Page ID: BIN-SEQA-Concepts

Author:
Boris Steipe ( <boris.steipe@utoronto.ca> )
Created:
2017-08-05
Last modified:
2022-09-14
Version:
1.1
Version History:
–  1.1 Maintenancne
–  1.0 First live
–  0.1 First stub
Tagged with:
–  Unit
–  Live
–  Has lecture slides

 

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