Difference between revisions of "BIN-FUNC-Annotation"

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Function Annotation
 
Function Annotation
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<div style="padding:5px; margin-top:20px; margin-bottom:10px; background-color:#97bed5; font-size:30%; font-weight:200; color: #000000; ">
 
(Collect function annotation strategies; DAVID and GSEA)
 
(Collect function annotation strategies; DAVID and GSEA)
 
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<b>Abstract:</b><br />
 
<b>Abstract:</b><br />
 
<section begin=abstract />
 
<section begin=abstract />
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...
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Milestone unit for functional annotation.
 
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<b>Deliverables:</b><br />
 
<b>Deliverables:</b><br />
 
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<section begin=deliverables />
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<li><b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.</li>
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*<b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
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<li><b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.</li>
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<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" -->
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<li><b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].</li>
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*<b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.
 
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*<b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].
 
 
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<section begin=prerequisites />
 
<section begin=prerequisites />
 
<b>Prerequisites:</b><br />
 
<b>Prerequisites:</b><br />
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<!-- included from "./data/ABC-unit_components.txt", section: "notes-prerequisites" -->
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This unit builds on material covered in the following prerequisite units:<br />
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This unit builds on material covered in the following prerequisite units:
 
 
*[[BIN-FUNC-Domain_annotation|BIN-FUNC-Domain_annotation (Domain Annotation)]]
 
*[[BIN-FUNC-Domain_annotation|BIN-FUNC-Domain_annotation (Domain Annotation)]]
 
*[[BIN-FUNC-Semantic_similarity|BIN-FUNC-Semantic_similarity (Measuring "Semantic Similarity" in Ontologies)]]
 
*[[BIN-FUNC-Semantic_similarity|BIN-FUNC-Semantic_similarity (Measuring "Semantic Similarity" in Ontologies)]]
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{{DEV}}
 
  
 
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=== Evaluation ===
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<b>Evaluation: NA</b><br />
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<div style="margin-left: 2rem;">This unit is not evaluated for course marks.</div>
 
== Contents ==
 
== Contents ==
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<!-- included from "./components/BIN-FUNC-Annotation.components.txt", section: "contents" -->
 
  
 
{{Task|1=
 
{{Task|1=
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*Read the introductory notes on {{ABC-PDF|BIN-FUNC-Annotation| annotating gene sequences with function information}}.
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*Read the introductory notes on {{ABC-PDF|BIN-FUNC-Annotation| annotating gene sequences with function information}}. When you are done, you are redy to proceed to the [[ABC-INT-Genome_annotation|Genome Annotation]] integrator unit.
 
}}
 
}}
  
  
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== Self-evaluation ==
 
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== Notes ==
 
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<references />
 
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== Further reading, links and resources ==
 
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<!-- {{#pmid: 19957275}} -->
 
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<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
 
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<b>If in doubt, ask!</b> If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
 
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<div class="about">
 
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:2017-08-05
 
:2017-08-05
 
<b>Modified:</b><br />
 
<b>Modified:</b><br />
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:2017-08-05
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:2020-09-24
 
<b>Version:</b><br />
 
<b>Version:</b><br />
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:0.1
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:0.2
 
<b>Version history:</b><br />
 
<b>Version history:</b><br />
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*0.2 2020 Maintenance
 
*0.1 First stub
 
*0.1 First stub
 
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[[Category:ABC-units]]
 
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Revision as of 09:07, 25 September 2020

Function Annotation

(Collect function annotation strategies; DAVID and GSEA)


 


Abstract:

Milestone unit for functional annotation.

Objectives:
...

Outcomes:
...

Deliverables:

  • Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
  • Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
  • Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.

    • Prerequisites:
    This unit builds on material covered in the following prerequisite units:


     



     



     


    Evaluation

    Evaluation: NA

    This unit is not evaluated for course marks.

    Contents

    Task:



     


    About ...
     
    Author:

    Boris Steipe <boris.steipe@utoronto.ca>

    Created:

    2017-08-05

    Modified:

    2020-09-24

    Version:

    0.2

    Version history:

    • 0.2 2020 Maintenance
    • 0.1 First stub

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    Retrieved from "http://steipe.biochemistry.utoronto.ca/abc/index.php?title=BIN-FUNC-Annotation&oldid=11655"