Difference between revisions of "User:Boris/Temp/APB"

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===Systems and Tools===
 
===Systems and Tools===
 
<table width="100%">
 
<table width="100%">
<tr class="s1"><td class="l1">[[Unix]]<span class="mw-collapsible mw-collapsed" data-expandtext="Expand related topics" data-collapsetext="Collapse">
+
<!-- tr class="s1"><td class="l1">[[Unix]]<span class="mw-collapsible mw-collapsed" data-expandtext="Expand related topics" data-collapsetext="Collapse" -->
<table width="100%">
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<tr class="s1"><td class="l1 mw-collapsible mw-collapsed" data-expandtext="Expand related topics" data-collapsetext="Collapse">[[Unix]]
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<table width="100%" class="mw-collapsible-content">
 
<tr class="s2"><td class="l2">[[Unix system administration]]</td></tr>
 
<tr class="s2"><td class="l2">[[Unix system administration]]</td></tr>
 
<tr class="s1"><td class="l2">[[Unix automation]]</td></tr>
 
<tr class="s1"><td class="l2">[[Unix automation]]</td></tr>
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<tr class="s1"><td class="l2">[[wget]]</td></tr>
 
<tr class="s1"><td class="l2">[[wget]]</td></tr>
 
</table>
 
</table>
</span>
+
 
 
</td></tr>
 
</td></tr>
 
<tr class="s2"><td class="l1">[[Network Configuration]]</td></tr>
 
<tr class="s2"><td class="l1">[[Network Configuration]]</td></tr>

Revision as of 15:33, 19 September 2012

 

Hardware

High performance computing
Cloud computing
 

Systems and Tools

Unix
Unix system administration
Unix automation
Program installation
wget
Network Configuration
Apache
MySQL
Tools for the bioinformatics lab
GBrowse and LDAS
 

Programming

IDE (Integrated Development Environment)
Regular Expressions
Screenscraping
Perl
BioPerl
PHP
Relational database principles
BioPython
Graphical output
Autonomous agents

Algorithms

Algorithms on Sequences
Dynamic Programming
Multiple Sequence Alignment
Genome Assembly
 
Algorithms on Structures
Docking
Protein Structure Prediction
 
Algorithms on Trees
Computing with trees
 
Algorithms on Networks
Network metrics
Dijkstras Algorithm
Floyd Warshall Algorithm


Communication and collaboration

MediaWiki
HTML essentials
HTML 5
SADI Semantic Automated Discovery and Integration
CGI
 

Statistics

Pattern discovery
Correlation
Clustering methods
Cluster metrics
The Map Equation
Machine learning
R
R plotting
R programming
R EDA
R regression
R PCA
R Clustering
R Classification
R hypothesis testing
Bioconductor
 

Applications

Data integration
Text mining
HMMER
High-throughput sequencing
Functional annotation
Microarray analysis