Difference between revisions of "User:Boris/Temp/APB"

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<table width="33%">
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===Hardware===
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<tr class="sh"><td>Hardware</td></tr>
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<table width="33%" align="center">
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<tr class="s1"><td>High performance computing <!-- (... at the bench: GPUs, FPGAs, Clusters) --></td></tr>
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<tr class="s1"><td class="l1">High performance computing <!-- (... at the bench: GPUs, FPGAs, Clusters) --></td></tr>
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<tr class="s2"><td>Cloud computing</td></tr>
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<tr class="s2"><td class="l1">Cloud computing</td></tr>
 
</table>
 
</table>
  
  
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===Systems and Tools===
 
<table width="33%">
 
<table width="33%">
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<tr class="sh"><td>Systems and Tools</td></tr>
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<tr class="s1"><td class="l1">[[Unix]]</td></tr>
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<tr class="s1"><td>[[Unix]]</td></tr>
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<tr class="s2"><td class="l2">[[Network Configuration]]</td></tr>
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<tr class="s2"><td>[[Network Configuration]]</td></tr>
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<tr class="s1"><td class="l3">[[Apache]]</td></tr>
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<tr class="s1"><td>[[Apache]]</td></tr>
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<tr class="s2"><td class="l4">[[MySQL]]</td></tr>
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<tr class="s2"><td>[[MySQL]]</td></tr>
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<tr class="s1"><td class="l1">[[Tools for the bioinformatics lab]]</td></tr>
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<tr class="s1"><td>[[Tools for the bioinformatics lab]]</td></tr>
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<tr class="s2"><td class="l1">[[GBrowse|GBrowse and LDAS]]</td></tr>
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<tr class="s2"><td>[[GBrowse|GBrowse and LDAS]]</td></tr>
 
 
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<tr class="s2"><td>Microarray analysis <!-- (... in R: differential expression and multiple testing; Loading and normalizing data, calculating differential expression, LOWESS, the question of significance, FWERs: Bonferroni and FDR; SAM and LIMMA) --></td></tr>
 
<tr class="s2"><td>Microarray analysis <!-- (... in R: differential expression and multiple testing; Loading and normalizing data, calculating differential expression, LOWESS, the question of significance, FWERs: Bonferroni and FDR; SAM and LIMMA) --></td></tr>
 
</table>
 
</table>
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</td></tr></table>
  
 
</div>
 
</div>

Revision as of 02:51, 19 September 2012

[...]

Hardware

High performance computing
Cloud computing


Systems and Tools

Unix
Network Configuration
Apache
MySQL
Tools for the bioinformatics lab
GBrowse and LDAS


Programming
IDE (Integrated Development Environment)
Regular Expressions
Screenscraping
Perl
BioPerl
PHP
Relational database principles
BioPython
Graphical output
Autonomous agents


Algorithms on Sequences
Dynamic Programming
Multiple Sequence Alignment
Genome Assembly
Algorithms on Structures
Docking
Protein Structure Prediction
Algorithms on Trees
Computing with trees
Algorithms on Networks
Network metrics
Dijkstras Algorithm
Floyd Warshall Algorithm


Communication and collaboration
MediaWiki
HTML essentials
HTML 5
SADI Semantic Automated Discovery and Integration
CGI


Statistics
Pattern discovery
Correlation
Clustering methods
Cluster metrics
The Map Equation
Machine learning
R
- R plotting
- R programming
- R EDA
- R regression
- R PCA
- R Clustering
- R Classification
- R hypothesis testing
- Bioconductor


Applications
Data integration
Text mining
HMMER
High-throughput sequencing
Functional annotation
Microarray analysis
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