Difference between revisions of "BIN-SEQA-Concepts"

From "A B C"
Jump to navigation Jump to search
m
m
 
Line 1: Line 1:
 
<div id="ABC">
 
<div id="ABC">
−
<div style="padding:5px; border:1px solid #000000; background-color:#f4d7b7; font-size:300%; font-weight:400; color: #000000; width:100%;">
+
<div style="padding:5px; border:1px solid #000000; background-color:#b3dbce; font-size:300%; font-weight:400; color: #000000; width:100%;">
 
Concepts of Sequence Analysis
 
Concepts of Sequence Analysis
−
<div style="padding:5px; margin-top:20px; margin-bottom:10px; background-color:#f4d7b7; font-size:30%; font-weight:200; color: #000000; ">
+
<div style="padding:5px; margin-top:20px; margin-bottom:10px; background-color:#b3dbce; font-size:30%; font-weight:200; color: #000000; ">
 
(constitution cooncatenation comparison correspondence conservation composition collaboration; Web-services; analysis tools; bioinformatics.ca)
 
(constitution cooncatenation comparison correspondence conservation composition collaboration; Web-services; analysis tools; bioinformatics.ca)
 
</div>
 
</div>
Line 10: Line 10:
  
  
−
<div style="padding:5px; border:1px solid #000000; background-color:#f4d7b733; font-size:85%;">
+
<div style="padding:5px; border:1px solid #000000; background-color:#b3dbce33; font-size:85%;">
 
<div style="font-size:118%;">
 
<div style="font-size:118%;">
 
<b>Abstract:</b><br />
 
<b>Abstract:</b><br />
Line 41: Line 41:
 
<b>Deliverables:</b><br />
 
<b>Deliverables:</b><br />
 
<section begin=deliverables />
 
<section begin=deliverables />
−
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-time_management" -->
 
 
<li><b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.</li>
 
<li><b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.</li>
−
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" -->
 
 
<li><b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.</li>
 
<li><b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.</li>
−
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-insights" -->
 
 
<li><b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].</li>
 
<li><b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].</li>
 
<section end=deliverables />
 
<section end=deliverables />
Line 52: Line 49:
 
<section begin=prerequisites />
 
<section begin=prerequisites />
 
<b>Prerequisites:</b><br />
 
<b>Prerequisites:</b><br />
−
<!-- included from "./data/ABC-unit_components.txt", section: "notes-external_prerequisites" -->
 
 
You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:<br />
 
You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:<br />
−
<!-- included from "./data/ABC-unit_prerequisites.txt", section: "biomolecules" -->
 
 
*<b>Biomolecules</b>: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.
 
*<b>Biomolecules</b>: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.
−
<!-- included from "./data/ABC-unit_components.txt", section: "notes-prerequisites" -->
 
 
This unit builds on material covered in the following prerequisite units:<br />
 
This unit builds on material covered in the following prerequisite units:<br />
 
*[[RPR-Biostrings|RPR-Biostrings (The biostrings R Package)]]
 
*[[RPR-Biostrings|RPR-Biostrings (The biostrings R Package)]]
Line 67: Line 61:
  
  
−
{{REVISE}}
 
  
 
{{Smallvspace}}
 
{{Smallvspace}}
Line 77: Line 70:
  
  
 +
=== Evaluation ===
 +
<b>Evaluation: NA</b><br />
 +
<div style="margin-left: 2rem;">This unit is not evaluated for course marks.</div>
 
== Contents ==
 
== Contents ==
−
<!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "contents" -->
 
 
{{Task|1=
 
{{Task|1=
 
*Read the introductory notes on {{ABC-PDF|BIN-SEQA-Concepts|categorizing the approaches to biological sequence analysis}}.
 
*Read the introductory notes on {{ABC-PDF|BIN-SEQA-Concepts|categorizing the approaches to biological sequence analysis}}.
Line 88: Line 83:
  
  
−
== Self-evaluation ==
 
−
<!--
 
−
=== Question 1===
 
−
 
−
Question ...
 
−
 
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:800px">
 
−
Answer ...
 
−
<div class="mw-collapsible-content">
 
−
Answer ...
 
−
 
−
</div>
 
−
  </div>
 
−
 
−
  {{Vspace}}
 
−
 
−
-->
 
−
== Notes ==
 
−
<!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "notes" -->
 
−
<!-- included from "./data/ABC-unit_components.txt", section: "notes" -->
 
−
<references />
 
−
== Further reading, links and resources ==
 
−
<!-- {{#pmid: 19957275}} -->
 
−
<!-- {{WWW|WWW_GMOD}} -->
 
−
<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
 
−
 
−
{{Vspace}}
 
−
 
−
 
−
<!-- included from "./data/ABC-unit_components.txt", section: "ABC-unit_ask" -->
 
−
 
−
----
 
  
 
{{Vspace}}
 
{{Vspace}}
  
−
<b>If in doubt, ask!</b> If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
 
−
 
−
----
 
−
 
−
{{Vspace}}
 
  
 
<div class="about">
 
<div class="about">
Line 137: Line 95:
 
:2017-08-05
 
:2017-08-05
 
<b>Modified:</b><br />
 
<b>Modified:</b><br />
−
:2017-11-09
+
:2020-09-23
 
<b>Version:</b><br />
 
<b>Version:</b><br />
−
:1.0
+
:1.1
 
<b>Version history:</b><br />
 
<b>Version history:</b><br />
 +
*1.1 Maintenancne
 
*1.0 First live
 
*1.0 First live
 
*0.1 First stub
 
*0.1 First stub
 
</div>
 
</div>
−
[[Category:ABC-units]]
 
−
<!-- included from "./data/ABC-unit_components.txt", section: "ABC-unit_footer" -->
 
  
 
{{CC-BY}}
 
{{CC-BY}}
  
 +
[[Category:ABC-units]]
 +
{{UNIT}}
 +
{{LIVE}}
 
</div>
 
</div>
 
<!-- [END] -->
 
<!-- [END] -->

Latest revision as of 11:28, 24 September 2020

Concepts of Sequence Analysis

(constitution cooncatenation comparison correspondence conservation composition collaboration; Web-services; analysis tools; bioinformatics.ca)


 


Abstract:

This unit introduces a typology of sequence analysis strategies and presents common access points to sequence analysis tools.

Objectives:
This unit will ...

  • ... introduce a typology of sequence analysis strategies;
  • ... discuss sound principles for developin sequence analysis experiments;
  • ... showcase some access points to sequence analysis tools in common use.

Outcomes:
After working through this unit you ...

  • ... are familar with how sequence analysis strategies can be organized;
  • ... can critically evaluate your own sequence analysis experiments for completeness, soundness, and whether they can be extended;
  • ... are familar with common access points to bioinformatics tools.

Deliverables:

  • Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
  • Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
  • Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.

    • Prerequisites:
    You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:

    • Biomolecules: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.

    This unit builds on material covered in the following prerequisite units:


     



     



     


    Evaluation

    Evaluation: NA

    This unit is not evaluated for course marks.

    Contents

    Task:


     



     


    About ...
     
    Author:

    Boris Steipe <boris.steipe@utoronto.ca>

    Created:

    2017-08-05

    Modified:

    2020-09-23

    Version:

    1.1

    Version history:

    • 1.1 Maintenancne
    • 1.0 First live
    • 0.1 First stub

    CreativeCommonsBy.png This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License. Follow the link to learn more.

    Retrieved from "http://steipe.biochemistry.utoronto.ca/abc/index.php?title=BIN-SEQA-Concepts&oldid=11632"