Difference between revisions of "BIN-SEQA-Concepts"
Jump to navigation
Jump to search
m |
m |
||
| Line 28: | Line 28: | ||
== Abstract == | == Abstract == | ||
<section begin=abstract /> | <section begin=abstract /> | ||
| − | <!-- included from " | + | <!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "abstract" --> |
This unit introduces a typology of sequence analysis strategies and presents common access points to sequence analysis tools. | This unit introduces a typology of sequence analysis strategies and presents common access points to sequence analysis tools. | ||
<section end=abstract /> | <section end=abstract /> | ||
| Line 37: | Line 37: | ||
== This unit ... == | == This unit ... == | ||
=== Prerequisites === | === Prerequisites === | ||
| − | <!-- included from " | + | <!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "prerequisites" --> |
| − | <!-- included from "ABC-unit_components. | + | <!-- included from "./data/ABC-unit_components.txt", section: "notes-external_prerequisites" --> |
You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources: | You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources: | ||
| − | <!-- included from " | + | <!-- included from "./data/ABC-unit_prerequisites.txt", section: "biomolecules" --> |
*<b>Biomolecules</b>: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function. | *<b>Biomolecules</b>: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function. | ||
| − | <!-- included from "ABC-unit_components. | + | <!-- included from "./data/ABC-unit_components.txt", section: "notes-prerequisites" --> |
You need to complete the following units before beginning this one: | You need to complete the following units before beginning this one: | ||
*[[RPR-Biostrings|RPR-Biostrings (The biostrings R Package)]] | *[[RPR-Biostrings|RPR-Biostrings (The biostrings R Package)]] | ||
| Line 51: | Line 51: | ||
=== Objectives === | === Objectives === | ||
| − | <!-- included from " | + | <!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "objectives" --> |
This unit will ... | This unit will ... | ||
* ... introduce a typology of sequence analysis strategies; | * ... introduce a typology of sequence analysis strategies; | ||
| Line 61: | Line 61: | ||
=== Outcomes === | === Outcomes === | ||
| − | <!-- included from " | + | <!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "outcomes" --> |
After working through this unit you ... | After working through this unit you ... | ||
* ... are familar with how sequence analysis strategies can be organized; | * ... are familar with how sequence analysis strategies can be organized; | ||
| Line 71: | Line 71: | ||
=== Deliverables === | === Deliverables === | ||
| − | <!-- included from " | + | <!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "deliverables" --> |
| − | <!-- included from "ABC-unit_components. | + | <!-- included from "./data/ABC-unit_components.txt", section: "deliverables-time_management" --> |
*<b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit. | *<b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit. | ||
| − | <!-- included from "ABC-unit_components. | + | <!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" --> |
*<b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these. | *<b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these. | ||
| − | <!-- included from "ABC-unit_components. | + | <!-- included from "./data/ABC-unit_components.txt", section: "deliverables-insights" --> |
*<b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]]. | *<b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]]. | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
{{Vspace}} | {{Vspace}} | ||
| Line 94: | Line 85: | ||
<div id="BIO"> | <div id="BIO"> | ||
== Contents == | == Contents == | ||
| − | <!-- included from " | + | <!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "contents" --> |
{{Task|1= | {{Task|1= | ||
*Read the introductory notes on {{ABC-PDF|BIN-SEQA-Concepts|categorizing the approaches to biological sequence analysis}}. | *Read the introductory notes on {{ABC-PDF|BIN-SEQA-Concepts|categorizing the approaches to biological sequence analysis}}. | ||
| Line 117: | Line 108: | ||
== Notes == | == Notes == | ||
| − | <!-- included from " | + | <!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "notes" --> |
| − | <!-- included from "ABC-unit_components. | + | <!-- included from "./data/ABC-unit_components.txt", section: "notes" --> |
<references /> | <references /> | ||
| Line 127: | Line 118: | ||
<div id="ABC-unit-framework"> | <div id="ABC-unit-framework"> | ||
== Self-evaluation == | == Self-evaluation == | ||
| − | <!-- included from " | + | <!-- included from "./components/BIN-SEQA-Concepts.components.txt", section: "self-evaluation" --> |
<!-- | <!-- | ||
=== Question 1=== | === Question 1=== | ||
| Line 152: | Line 143: | ||
| − | <!-- included from "ABC-unit_components. | + | <!-- included from "./data/ABC-unit_components.txt", section: "ABC-unit_ask" --> |
---- | ---- | ||
| Line 180: | Line 171: | ||
</div> | </div> | ||
[[Category:ABC-units]] | [[Category:ABC-units]] | ||
| − | <!-- included from "ABC-unit_components. | + | <!-- included from "./data/ABC-unit_components.txt", section: "ABC-unit_footer" --> |
{{CC-BY}} | {{CC-BY}} | ||
Revision as of 01:25, 6 January 2018
Concepts of Sequence Analysis
Keywords: constitution cooncatenation comparison correspondence conservation composition collaboration; Web-services; analysis tools; bioinformatics.ca
Contents
Abstract
This unit introduces a typology of sequence analysis strategies and presents common access points to sequence analysis tools.
This unit ...
Prerequisites
You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:
- Biomolecules: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.
You need to complete the following units before beginning this one:
Objectives
This unit will ...
- ... introduce a typology of sequence analysis strategies;
- ... discuss sound principles for developin sequence analysis experiments;
- ... showcase some access points to sequence analysis tools in common use.
Outcomes
After working through this unit you ...
- ... are familar with how sequence analysis strategies can be organized;
- ... can critically evaluate your own sequence analysis experiments for completeness, soundness, and whether they can be extended;
- ... are familar with common access points to bioinformatics tools.
Deliverables
- Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
- Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
- Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.
Contents
Task:
- Read the introductory notes on categorizing the approaches to biological sequence analysis.
Further reading, links and resources
Notes
Self-evaluation
If in doubt, ask! If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
About ...
Author:
- Boris Steipe <boris.steipe@utoronto.ca>
Created:
- 2017-08-05
Modified:
- 2017-11-09
Version:
- 1.0
Version history:
- 1.0 First live
- 0.1 First stub
This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License. Follow the link to learn more.
