Difference between revisions of "Assignment 5 SwissModel Results"
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| − | < | + | <pre> |
| − | From: | + | From: swissmodel@unibas.ch |
| − | + | Subject: SWISS_MODEL_Results_AAAa09bX4 | |
| − | + | Date: December 5, 2006 7:30:54 PM EST (CA) | |
| − | + | To: boris.steipe@utoronto.ca | |
| − | + | Reply-To: swissmodel@unibas.ch | |
| − | + | ||
| − | ProModII started 5-Dec-2006 | + | ProModII started 5-Dec-2006 |
| − | Process ID AAAa09bX4 | + | Process ID AAAa09bX4 |
Model Titel Model MBP1_CHAGL | Model Titel Model MBP1_CHAGL | ||
| − | + | ||
| − | ------------------------------------------------------ | + | ------------------------------------------------------ |
| − | ProModII Log follows: | + | ProModII Log follows: |
| − | ================================================================== | + | ================================================================== |
| − | ProModII: 3.70 (SP3) | + | ProModII: 3.70 (SP3) |
| − | ProModII: Loading Template: 1mb1_.pdb | + | ProModII: Loading Template: 1mb1_.pdb |
| − | ProModII: Loading Raw Sequence | + | ProModII: Loading Raw Sequence |
| − | ProModII: Loading FoldFit Alignment: ./Align.ff | + | ProModII: Loading FoldFit Alignment: ./Align.ff |
| − | ProModII: Refining Raw Sequence Alignment | + | ProModII: Refining Raw Sequence Alignment |
| − | ProModII: ProModII: doing simple assignment of backbone | + | ProModII: ProModII: doing simple assignment of backbone |
| − | ProModII: ProModII: adding blocking groups | + | ProModII: ProModII: adding blocking groups |
| − | ProModII: Adding Missing Sidechains | + | ProModII: Adding Missing Sidechains |
| − | ProModII: Building CSP loop with anchor residues ASP 21 and HIS 25 | + | ProModII: Building CSP loop with anchor residues ASP 21 and HIS 25 |
| − | ProModII: Number of Ligations found: 1 | + | ProModII: Number of Ligations found: 1 |
| − | ProModII: all loops are bad; continuing CSP with larger segment | + | ProModII: all loops are bad; continuing CSP with larger segment |
| − | ProModII: Building CSP loop with anchor residues PRO 20 and HIS 25 | + | ProModII: Building CSP loop with anchor residues PRO 20 and HIS 25 |
| − | ProModII: Number of Ligations found: 273 | + | ProModII: Number of Ligations found: 273 |
| − | ProModII: all loops are bad; continuing CSP with larger segment | + | ProModII: all loops are bad; continuing CSP with larger segment |
| − | ProModII: Building CSP loop with anchor residues GLY 19 and HIS 25 | + | ProModII: Building CSP loop with anchor residues GLY 19 and HIS 25 |
| − | ProModII: Number of Ligations found: 500 | + | ProModII: Number of Ligations found: 500 |
| − | ProModII: ACCEPTING loop 316: clash= 0 FF= -5.3 PP= -1.00 | + | ProModII: ACCEPTING loop 316: clash= 0 FF= -5.3 PP= -1.00 |
| − | ProModII: Optimizing Sidechains | + | ProModII: Optimizing Sidechains |
| − | ProModII: Dumping Preliminary Model | + | ProModII: Dumping Preliminary Model |
| − | ProModII: Adding Hydrogens | + | ProModII: Adding Hydrogens |
| − | ProModII: Optimizing loops and OXT (nb = 7) | + | ProModII: Optimizing loops and OXT (nb = 7) |
| − | ProModII: Final Total Energy: -5387.869 KJ/mol | + | ProModII: Final Total Energy: -5387.869 KJ/mol |
| − | ProModII: Removing Hydrogens | + | ProModII: Removing Hydrogens |
| − | ProModII: Fixing Atom Nomenclature | + | ProModII: Fixing Atom Nomenclature |
| − | ProModII: Dumping Sequence Alignment | + | ProModII: Dumping Sequence Alignment |
| − | + | ||
| − | </ | + | </pre> |
Latest revision as of 02:03, 6 December 2006
From: swissmodel@unibas.ch
Subject: SWISS_MODEL_Results_AAAa09bX4
Date: December 5, 2006 7:30:54 PM EST (CA)
To: boris.steipe@utoronto.ca
Reply-To: swissmodel@unibas.ch
ProModII started 5-Dec-2006
Process ID AAAa09bX4
Model Titel Model MBP1_CHAGL
------------------------------------------------------
ProModII Log follows:
==================================================================
ProModII: 3.70 (SP3)
ProModII: Loading Template: 1mb1_.pdb
ProModII: Loading Raw Sequence
ProModII: Loading FoldFit Alignment: ./Align.ff
ProModII: Refining Raw Sequence Alignment
ProModII: ProModII: doing simple assignment of backbone
ProModII: ProModII: adding blocking groups
ProModII: Adding Missing Sidechains
ProModII: Building CSP loop with anchor residues ASP 21 and HIS 25
ProModII: Number of Ligations found: 1
ProModII: all loops are bad; continuing CSP with larger segment
ProModII: Building CSP loop with anchor residues PRO 20 and HIS 25
ProModII: Number of Ligations found: 273
ProModII: all loops are bad; continuing CSP with larger segment
ProModII: Building CSP loop with anchor residues GLY 19 and HIS 25
ProModII: Number of Ligations found: 500
ProModII: ACCEPTING loop 316: clash= 0 FF= -5.3 PP= -1.00
ProModII: Optimizing Sidechains
ProModII: Dumping Preliminary Model
ProModII: Adding Hydrogens
ProModII: Optimizing loops and OXT (nb = 7)
ProModII: Final Total Energy: -5387.869 KJ/mol
ProModII: Removing Hydrogens
ProModII: Fixing Atom Nomenclature
ProModII: Dumping Sequence Alignment
