Assignment 5 SwissModel Results
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From: swissmodel@unibas.ch
Subject: SWISS_MODEL_Results_AAAa09bX4
Date: December 5, 2006 7:30:54 PM EST (CA)
To: boris.steipe@utoronto.ca
Reply-To: swissmodel@unibas.ch
ProModII started 5-Dec-2006
Process ID AAAa09bX4
Model Titel Model MBP1_CHAGL
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ProModII Log follows:
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ProModII: 3.70 (SP3)
ProModII: Loading Template: 1mb1_.pdb
ProModII: Loading Raw Sequence
ProModII: Loading FoldFit Alignment: ./Align.ff
ProModII: Refining Raw Sequence Alignment
ProModII: ProModII: doing simple assignment of backbone
ProModII: ProModII: adding blocking groups
ProModII: Adding Missing Sidechains
ProModII: Building CSP loop with anchor residues ASP 21 and HIS 25
ProModII: Number of Ligations found: 1
ProModII: all loops are bad; continuing CSP with larger segment
ProModII: Building CSP loop with anchor residues PRO 20 and HIS 25
ProModII: Number of Ligations found: 273
ProModII: all loops are bad; continuing CSP with larger segment
ProModII: Building CSP loop with anchor residues GLY 19 and HIS 25
ProModII: Number of Ligations found: 500
ProModII: ACCEPTING loop 316: clash= 0 FF= -5.3 PP= -1.00
ProModII: Optimizing Sidechains
ProModII: Dumping Preliminary Model
ProModII: Adding Hydrogens
ProModII: Optimizing loops and OXT (nb = 7)
ProModII: Final Total Energy: -5387.869 KJ/mol
ProModII: Removing Hydrogens
ProModII: Fixing Atom Nomenclature
ProModII: Dumping Sequence Alignment
