Assignment 5 SwissModel Results
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From: swissmodel@unibas.ch Subject: SWISS_MODEL_Results_AAAa09bX4 Date: December 5, 2006 7:30:54 PM EST (CA) To: boris.steipe@utoronto.ca Reply-To: swissmodel@unibas.ch ProModII started 5-Dec-2006 Process ID AAAa09bX4 Model Titel Model MBP1_CHAGL ------------------------------------------------------ ProModII Log follows: ================================================================== ProModII: 3.70 (SP3) ProModII: Loading Template: 1mb1_.pdb ProModII: Loading Raw Sequence ProModII: Loading FoldFit Alignment: ./Align.ff ProModII: Refining Raw Sequence Alignment ProModII: ProModII: doing simple assignment of backbone ProModII: ProModII: adding blocking groups ProModII: Adding Missing Sidechains ProModII: Building CSP loop with anchor residues ASP 21 and HIS 25 ProModII: Number of Ligations found: 1 ProModII: all loops are bad; continuing CSP with larger segment ProModII: Building CSP loop with anchor residues PRO 20 and HIS 25 ProModII: Number of Ligations found: 273 ProModII: all loops are bad; continuing CSP with larger segment ProModII: Building CSP loop with anchor residues GLY 19 and HIS 25 ProModII: Number of Ligations found: 500 ProModII: ACCEPTING loop 316: clash= 0 FF= -5.3 PP= -1.00 ProModII: Optimizing Sidechains ProModII: Dumping Preliminary Model ProModII: Adding Hydrogens ProModII: Optimizing loops and OXT (nb = 7) ProModII: Final Total Energy: -5387.869 KJ/mol ProModII: Removing Hydrogens ProModII: Fixing Atom Nomenclature ProModII: Dumping Sequence Alignment