Difference between revisions of "BIN-SX-Superposition"
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Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.
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Structure Superposition | Structure Superposition | ||
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(Structure superposition and superposition-derived alignment) | (Structure superposition and superposition-derived alignment) | ||
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<b>Abstract:</b><br /> | <b>Abstract:</b><br /> | ||
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| − | + | <li><b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.</li> | |
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" --> | <!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" --> | ||
| − | + | <li><b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.</li> | |
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-insights" --> | <!-- included from "./data/ABC-unit_components.txt", section: "deliverables-insights" --> | ||
| − | + | <li><b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].</li> | |
<section end=deliverables /> | <section end=deliverables /> | ||
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<b>Prerequisites:</b><br /> | <b>Prerequisites:</b><br /> | ||
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| − | This unit builds on material covered in the following prerequisite units: | + | This unit builds on material covered in the following prerequisite units:<br /> |
*[[BIN-ALI-Alignment|BIN-ALI-Alignment (Sequence alignment concepts)]] | *[[BIN-ALI-Alignment|BIN-ALI-Alignment (Sequence alignment concepts)]] | ||
*[[BIN-SX-Chimera|BIN-SX-Chimera (UCSF Chimera: Structure Visualization and Analysis)]] | *[[BIN-SX-Chimera|BIN-SX-Chimera (UCSF Chimera: Structure Visualization and Analysis)]] | ||
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{{Smallvspace}} | {{Smallvspace}} | ||
Revision as of 12:39, 16 September 2020
Structure Superposition
(Structure superposition and superposition-derived alignment)
Abstract:
This unit discusses the concepts and practice of structural superposition.
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Objectives:
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Outcomes:
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Deliverables:
Prerequisites:
This unit builds on material covered in the following prerequisite units:
This page is tagged for revision; expect changes and proceed with caution.
Contents
Task:
- Read the introductory notes on [http://steipe.biochemistry.utoronto.ca/abc/assets/BIN-SX-Superposition.pdf the optimal superposition of protein 3D structures
- Browse over the Wikipedia article on Structural Superposition (although the article is called "Structural Alignment").]
To compute your own superpositions, explore the following tutorials ...
Self-evaluation
Notes
Further reading, links and resources
If in doubt, ask! If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
About ...
Author:
- Boris Steipe <boris.steipe@utoronto.ca>
Created:
- 2017-08-05
Modified:
- 2017-10-29
Version:
- 1.0
Version history:
- 1.0 First live version
- 0.1 First stub
This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License. Follow the link to learn more.
