GMOD Generic Model Organism Database project
Gmod.org.jpg
http://gmod.org
GMOD (the Generic Model Organism Database project), is a collection of open source software tools for creating and managing genome-scale biological databases. GMOD tools are in use at many large and small community databases, especially for Model Organisms. The include the genome browser GBrowse, the CHADO relational database, the GFF annotation databases, and much more The goal is to free developers of community scale biomolecualr databases from reinventing the wheel. A good overview of resources and principles is available on the GMOD wiki.
===Reference===
| O'Connor et al. (2008) GMODWeb: a web framework for the Generic Model Organism Database. Genome Biol 9:R102. (pmid: 18570664) |
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[ PubMed ] [ DOI ] The Generic Model Organism Database (GMOD) initiative provides species-agnostic data models and software tools for representing curated model organism data. Here we describe GMODWeb, a GMOD project designed to speed the development of model organism database (MOD) websites. Sites created with GMODWeb provide integration with other GMOD tools and allow users to browse and search through a variety of data types. GMODWeb was built using the open source Turnkey web framework and is available from http://turnkey.sourceforge.net.
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GMOD Generic Model Organism Database project
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 GMOD Generic Model Organism Database project |
URL
http://gmod.org
Abstract
GMOD (the Generic Model Organism Database project), is a collection of open source software tools for creating and managing genome-scale biological databases. GMOD tools are in use at many large and small community databases, especially for Model Organisms. The include the genome browser GBrowse, the CHADO relational database, the GFF annotation databases, and much more The goal is to free developers of community scale biomolecualr databases from reinventing the wheel. A good overview of resources and principles is available on the GMOD wiki.
Reference
| O'Connor et al. (2008) GMODWeb: a web framework for the Generic Model Organism Database. Genome Biol 9:R102. (pmid: 18570664) |
|
[ PubMed ] [ DOI ] The Generic Model Organism Database (GMOD) initiative provides species-agnostic data models and software tools for representing curated model organism data. Here we describe GMODWeb, a GMOD project designed to speed the development of model organism database (MOD) websites. Sites created with GMODWeb provide integration with other GMOD tools and allow users to browse and search through a variety of data types. GMODWeb was built using the open source Turnkey web framework and is available from http://turnkey.sourceforge.net.
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