Homology modeling fallback data

Please remember: if you use information from this page as a fallback for technical problems with the assignment, you must document this in your submission. State what you tried, what didn't work and only then use the data from here.

Target sequence

This is just one of the reference species' sequences - I chose Mbp1_SCHPO because it is the most distantly related to saccharomyces cerevisiae.

>MBP1_SCHPO NP_593032 23..96
IKGVSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATK
YKV

FASTA formatted target-template alignment

This uses the 1MB1 PDB file as template, the sequence was extracted from coordinates using the WhatIf server.

>1MB1_A 3..100
NQIYSARYSGVDVYEFIHSTGSIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKET
HEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLF                    
>MBP1_SCHPO NP_593032 23..96
----------------IKGV-SVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGA
HEKVQGGYGKYQGTWVPFQRGVDLATK-----------

SwissModel response

Explanation of the output is found in the SwissModel Help page.

Graphical comparison of template and target sequence to emphasize which regions have been modelled.

Icon of the model

The target-template alignment:

TARGET    1                              HVMRRRE DNWINATHIL KAAGFDKPAR
1mb1_     3     nqiysarysg vdvyefihst g--simkrkk ddwvnathil kaanfakakr 
                                                                      
TARGET                                              ssshhhh hh    hhhh
1mb1_            sssssss   ssssssss   s  ssssss     ssshhhh hh    hhhh


TARGET    28    TRILERDVQK DVHEKIQGGY GKYQGTWIPL EQGRALAQRN NIYDRLRPIF
1mb1_     51    trilekevlk ethekvqggf gkyqgtwvpl niakqlaekf svydqlkplf
                                                                      
TARGET          hhhhhhhhh     sss         ssss h hhhhhhhhh    hh   hhh
1mb1_           hhhhh         sss         ssss h hhhhhhhhh    hh   hh 


TARGET                                                                
1mb1_           -