Lecture 19
(Previous lecture) ... (Next lecture)
Microarray Analysis
...
Add:
- Summary points
- Exercises
- Further reading
(Some of the slides in this lecture are based on material delivered by John Quackenbush at the February 2006 CBW workshop in Toronto.)
Lecture Slides
Slide 001
Lecture 19, Slide 001
Slide 002
Lecture 19, Slide 002
Slide 003
Lecture 19, Slide 003
Slide 004
Lecture 19, Slide 004
Slide 005
Lecture 19, Slide 005
Slide 006
Lecture 19, Slide 006
Slide 007
Lecture 19, Slide 007
Slide 008
Lecture 19, Slide 008
Rogojina et al. (2003) Use of Affymetrix to spotted oligonucleotide microarrays using two retinal epithelial cell lines. Molecular Vision 9:482-96
Rogojina et al. (2003) Use of Affymetrix to spotted oligonucleotide microarrays using two retinal epithelial cell lines. Molecular Vision 9:482-96
Slide 009
Lecture 19, Slide 009
Slide 010
Lecture 19, Slide 010
Slide 011
Lecture 19, Slide 011
Slide 012
Lecture 19, Slide 012
Slide 013
Lecture 19, Slide 013
Slide 014
Lecture 19, Slide 014
Slide 015
Lecture 19, Slide 015
Slide 016
Lecture 19, Slide 016
Writeup in Pertea et al. (2003) Bioinformatics 19:651-652
Writeup in Pertea et al. (2003) Bioinformatics 19:651-652
Slide 017
Lecture 19, Slide 017
Slide 018
Lecture 19, Slide 018
Slide 019
Lecture 19, Slide 019
Slide 020
Lecture 19, Slide 020
Slide 021
Lecture 19, Slide 021
Slide 022
Lecture 19, Slide 022
Slide 023
Lecture 19, Slide 023
Slide 024
Lecture 19, Slide 024
Slide 025
Lecture 19, Slide 025
Slide 026
Lecture 19, Slide 026
Slide 027
Lecture 19, Slide 027
(From J. Quackenbush) Bulk of genes lie on zero-line but there is evidence of differential expression
(From J. Quackenbush) Bulk of genes lie on zero-line but there is evidence of differential expression
Slide 028
Lecture 19, Slide 028
Slide 029
Lecture 19, Slide 029
Slide 030
Lecture 19, Slide 030
Slide 031
File:L19 s031.jpg
Lecture 19, Slide 031
Slide 032
File:L19 s032.jpg
Lecture 19, Slide 032
Variance stabilization is available e.g. within the MIDAS package.
Variance stabilization is available e.g. within the MIDAS package.
Slide 033
File:L19 s033.jpg
Lecture 19, Slide 033
Slide 034
File:L19 s034.jpg
Lecture 19, Slide 034
Synonymous: Expression profile
Synonymous: Expression profile
Slide 035
File:L19 s035.jpg
Lecture 19, Slide 035
Slide 036
File:L19 s036.jpg
Lecture 19, Slide 036
Slide 037
File:L19 s037.jpg
Lecture 19, Slide 037
Slide 038
File:L19 s038.jpg
Lecture 19, Slide 038
Slide 039
File:L19 s039.jpg
Lecture 19, Slide 039
Slide 040
File:L19 s040.jpg
Lecture 19, Slide 040
Slide 041
File:L19 s041.jpg
Lecture 19, Slide 041
Slide 042
File:L19 s042.jpg
Lecture 19, Slide 042
Slide 043
File:L19 s043.jpg
Lecture 19, Slide 043
Slide 044
File:L19 s044.jpg
Lecture 19, Slide 044
Slide 045
File:L19 s045.jpg
Lecture 19, Slide 045
Slide 046
File:L19 s046.jpg
Lecture 19, Slide 046
Slide 047
File:L19 s047.jpg
Lecture 19, Slide 047
Slide 048
File:L19 s048.jpg
Lecture 19, Slide 048
Slide 049
File:L19 s049.jpg
Lecture 19, Slide 049
Slide 050
File:L19 s050.jpg
Lecture 19, Slide 050
Slide 051
File:L19 s051.jpg
Lecture 19, Slide 051
