BIO Reference data

Reference data

Annotated links to reference data for Bioinformatics course assignments.

Species

Reference species for fungi

Explanation and definition for the "reference species" we use for the course.

Sequences and Annotations

Reference annotation yeast Mbp1

A reference annotation of the Saccharomyces cerevisiae Mbp1 protein sequence that integrates annotation sources we encounter throughout the course.

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Reference Mbp1 orthologues (all fungi)

Sequences for yeast Mbp1 orthologues (by RBM) in (all) genome sequenced fungi - multi FASTA format.

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Reference KilA-N proteins (reference species)

Reference KilA-N proteins (reference species)

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Reference KilA-N domains (reference species)

Reference KilA-N domains (reference species)

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Reference APSES domains (yeast)

All APSES domains from APSES domain proteins in saccharomyces cerevisiae - annotated.

Alignments

Reference alignment for Mbp1 orthologues (MUSCLE)

A multiple sequence alignment for orthologues (by RBM) to saccharomyces cerevisiae Mbp1 - computed with MUSCLE.

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Reference alignment for Mbp1 orthologues (T-COFFEE)

A multiple sequence alignment for orthologues (by RBM) to saccharomyces cerevisiae Mbp1 - computed with T-COFFEE.

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Reference alignment for APSES domain proteins (PSI-BLAST)

Reference alignment for APSES domain proteins (PSI-BLAST)

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Reference alignment for APSES domains (MUSCLE, reference species)

Reference alignment for APSES domains (MUSCLE, reference species)

Trees

Reference tree for APSES domains

A phylogentic tree for all APSES domains found in the reference fungi.