Homology modeling fallback data
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Please remember: if you use information from this page as a fallback for technical problems with the assignment, you must document this in your submission. State what you tried, what didn't work and only then use the data from here.
Contents
PHYLIP input data: Mbp1 orthologues
16 55 MBP1_SACCERDFIHSTGNFAKAKTQRLHTATNSQTPLMLLHETVFGDVVFFSLQKTNKLSSLVK MBP1_CANGLKDFIHPTGNFAKAKMQRLHTAANANTPLMLLSETVFNDREFFSLQKTRKISELIS MBP1_EREGOKEFLHPTGKFAKAKTGQHHTALNQATPLMLLQDTVFRDKKFFSTEKMHKINRLIE MBP1_KLULAKDFIHPTGKFPKAKTQRHHTALNNVTPLIILKDTVFKDDQFYDLVKMRKLNQIID MBP1_CANALTPFVTSEGKFPKAKIQRGNTIRNNNTPLMLLKESVLLNKKCIQMERTKLVDEISK MBP1_DEBHATPFVTLEGKFPKAKVQHGNTIKNNRTPLMLLFDSILLNKKCITYFKVENKENIKE MBP1_YARLITPFQCKNVGFDKPQVQSGHTATNMFTPLTILQDTLFGAKKVSMYFKLDLVDDVVE MBP1_SCHPOVECFIKGVDFDKPQASSGHTSCNRLTPLMLLQSTIYGAMDCVQVRQMKDTLYIRK MBP1_USTMATPCIINNVGLDKPQIETEHTAVNSNTALMSFTDPSLRSKRLVRANRLELVDKFVA MBP1_ASPNITPFKIGTDGFDKPAVSAGNTALSIHTPLVLLLDTISGVFRLVQAHGLAAVKELAQ MBP1_ASPTETPFKIEGDGFDKPAVSAGNTALSVHTPLVLLLDTVSGAFRLVSSYGAAAVKELAQ MBP1_CRYNEVPAMIRGIGVHKSAISMGHSAGNYATPLILLSPSIRGNKGLVVSYGSEVLEDKIR MBP1_GIBZESDMEVNNIGVDKGKESRSHTAVNGSTALMVLGGTIEGNRSIIATEASKMVSALKG MBP1_NEUCRTGMEVNNVNIDKGRENRSHTAVNACTALMLLGCTLDGNRSIITLHSTQAVAALQA MBP1_MAGGRVEFEVNGVGVEKGKEQRCHTAVNTSTPLMILGNTMEGNRSIITLHSQQSVVALKG MBP1_ASPFUVSMEVNGVGVVKARERKRNNALNGATALQVLAPTIDRSV-LVSLHATEILAEVDR
PHYLIP distance matrix: Mbp1 orthologues
16 MBP1_SACCE 0.000000 0.340197 0.641436 0.698015 1.217853 1.575914 1.679015 1.734556 2.205033 2.021848 2.012439 2.665819 1.676493 1.594736 1.572812 1.998416 MBP1_CANGL 0.340197 0.000000 0.573520 0.606792 1.101098 1.571271 1.788034 2.092392 1.858878 2.098264 2.010324 2.531040 1.531216 1.410911 1.432764 2.300807 MBP1_EREGO 0.641436 0.573520 0.000000 0.537044 1.273771 1.429173 1.510184 1.805609 1.780957 1.919228 1.961973 2.827827 1.791314 2.121850 1.882121 2.853653 MBP1_KLULA 0.698015 0.606792 0.537044 0.000000 1.191955 1.453182 1.674717 2.266314 2.264786 2.478006 2.696935 3.451189 2.487955 2.758670 2.041124 2.617325 MBP1_CANAL 1.217853 1.101098 1.273771 1.191955 0.000000 0.540067 1.525822 1.826937 1.371732 1.702409 1.765129 1.921376 1.853606 2.028292 1.834001 2.184056 MBP1_DEBHA 1.575914 1.571271 1.429173 1.453182 0.540067 0.000000 1.366472 2.111250 1.907877 2.038152 1.842951 2.041502 2.818372 2.349724 1.893817 3.091846 MBP1_YARLI 1.679015 1.788034 1.510184 1.674717 1.525822 1.366472 0.000000 1.458949 1.099978 1.258665 1.245131 1.791822 1.892723 1.798693 1.546586 2.470074 MBP1_SCHPO 1.734556 2.092392 1.805609 2.266314 1.826937 2.111250 1.458949 0.000000 1.965611 1.650181 1.760901 1.882590 1.829431 1.798599 1.652280 2.232678 MBP1_USTMA 2.205033 1.858878 1.780957 2.264786 1.371732 1.907877 1.099978 1.965611 0.000000 1.361737 1.543623 1.598177 1.516216 1.508336 1.687661 1.953468 MBP1_ASPNI 2.021848 2.098264 1.919228 2.478006 1.702409 2.038152 1.258665 1.650181 1.361737 0.000000 0.183195 1.506196 2.082772 1.858936 1.901732 2.043755 MBP1_ASPTE 2.012439 2.010324 1.961973 2.696935 1.765129 1.842951 1.245131 1.760901 1.543623 0.183195 0.000000 1.320001 1.972475 1.766234 1.810925 1.734993 MBP1_CRYNE 2.665819 2.531040 2.827827 3.451189 1.921376 2.041502 1.791822 1.882590 1.598177 1.506196 1.320001 0.000000 1.606068 1.876348 1.696345 1.378680 MBP1_GIBZE 1.676493 1.531216 1.791314 2.487955 1.853606 2.818372 1.892723 1.829431 1.516216 2.082772 1.972475 1.606068 0.000000 0.497095 0.523613 1.052197 MBP1_NEUCR 1.594736 1.410911 2.121850 2.758670 2.028292 2.349724 1.798693 1.798599 1.508336 1.858936 1.766234 1.876348 0.497095 0.000000 0.488870 1.020647 MBP1_MAGGR 1.572812 1.432764 1.882121 2.041124 1.834001 1.893817 1.546586 1.652280 1.687661 1.901732 1.810925 1.696345 0.523613 0.488870 0.000000 1.108262 MBP1_ASPFU 1.998416 2.300807 2.853653 2.617325 2.184056 3.091846 2.470074 2.232678 1.953468 2.043755 1.734993 1.378680 1.052197 1.020647 1.108262 0.000000
PHYLIP input data: Mbp1 APSES domains
16 84 MBP1_SACCESIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDG MBP1_CANGLSIMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEKFDVYQDLKPLFDFSEENG MBP1_EREGOSIMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQKFEVLEELRPLFDFTRRDG MBP1_KLULASIMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEKFEVLDELKPLFDFTQQEG MBP1_CANALPIMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARNFGVYDVLKPIFEFQYIEG MBP1_DEBHAPIMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKNFGVFDSLRPIFEFTYVEG MBP1_YARLIAVMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATLYDVDSHLAPIFNYDDEDG MBP1_SCHPOSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEG MBP1_USTMAAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPS-- MBP1_ASPNISVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVA--G MBP1_ASPTESVMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAERNNIIDKLRPIFDYVA--G MBP1_CRYNESVMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQYGVGSYLSSVFDFVPSAS MBP1_GIBZEAVMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQYGVEELLRPLLTYDMGQD MBP1_NEUCRAVMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQYGVEELLSKLLTHNRGQE MBP1_MAGGRAVMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQYGVEELLRPLLEYNRNPD MBP1_ASPFUAVMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCREYHVEELLRPLLEYDMGPN
PHYLIP distance matrix: Mbp1 APSES domains
16 MBP1_SACCE 0.000000 0.170047 0.205399 0.247219 0.487569 0.524603 0.579198 0.798266 0.690172 0.527376 0.544473 0.657178 0.895524 0.862050 0.905898 0.907783 MBP1_CANGL 0.170047 0.000000 0.279198 0.319549 0.559059 0.573474 0.519177 0.789154 0.733572 0.615596 0.625874 0.665870 0.899041 0.880370 0.935112 0.883959 MBP1_EREGO 0.205399 0.279198 0.000000 0.182532 0.544175 0.510304 0.585979 0.846715 0.738784 0.557436 0.539410 0.674472 0.880525 0.873348 0.850046 0.864623 MBP1_KLULA 0.247219 0.319549 0.182532 0.000000 0.467085 0.453277 0.638363 0.813078 0.772358 0.567769 0.575968 0.690719 0.852917 0.882337 0.830886 0.904034 MBP1_CANAL 0.487569 0.559059 0.544175 0.467085 0.000000 0.120290 0.589271 0.686670 0.799405 0.647996 0.639552 0.681593 0.746085 0.792284 0.817362 0.869237 MBP1_DEBHA 0.524603 0.573474 0.510304 0.453277 0.120290 0.000000 0.555420 0.667709 0.800353 0.592738 0.583278 0.641173 0.744716 0.811525 0.809515 0.839041 MBP1_YARLI 0.579198 0.519177 0.585979 0.638363 0.589271 0.555420 0.000000 0.473875 0.462053 0.388599 0.421408 0.503568 0.581799 0.593335 0.676734 0.691392 MBP1_SCHPO 0.798266 0.789154 0.846715 0.813078 0.686670 0.667709 0.473875 0.000000 0.532761 0.545135 0.573415 0.643554 0.593169 0.603559 0.762385 0.624657 MBP1_USTMA 0.690172 0.733572 0.738784 0.772358 0.799405 0.800353 0.462053 0.532761 0.000000 0.346127 0.383120 0.560953 0.597524 0.682290 0.675589 0.672514 MBP1_ASPNI 0.527376 0.615596 0.557436 0.567769 0.647996 0.592738 0.388599 0.545135 0.346127 0.000000 0.064477 0.503545 0.673114 0.778854 0.845557 0.762898 MBP1_ASPTE 0.544473 0.625874 0.539410 0.575968 0.639552 0.583278 0.421408 0.573415 0.383120 0.064477 0.000000 0.534114 0.699665 0.812899 0.847328 0.802412 MBP1_CRYNE 0.657178 0.665870 0.674472 0.690719 0.681593 0.641173 0.503568 0.643554 0.560953 0.503545 0.534114 0.000000 0.650085 0.653523 0.713330 0.695510 MBP1_GIBZE 0.895524 0.899041 0.880525 0.852917 0.746085 0.744716 0.581799 0.593169 0.597524 0.673114 0.699665 0.650085 0.000000 0.227631 0.185991 0.289073 MBP1_NEUCR 0.862050 0.880370 0.873348 0.882337 0.792284 0.811525 0.593335 0.603559 0.682290 0.778854 0.812899 0.653523 0.227631 0.000000 0.330632 0.480412 MBP1_MAGGR 0.905898 0.935112 0.850046 0.830886 0.817362 0.809515 0.676734 0.762385 0.675589 0.845557 0.847328 0.713330 0.185991 0.330632 0.000000 0.316199 MBP1_ASPFU 0.907783 0.883959 0.864623 0.904034 0.869237 0.839041 0.691392 0.624657 0.672514 0.762898 0.802412 0.695510 0.289073 0.480412 0.316199 0.000000
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