Difference between revisions of "Workshops/Saskatoon 2015-Introduction to R"

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==Useful links==
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* The '''R''' help mailing list:  https://stat.ethz.ch/mailman/listinfo/r-help
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* '''Rseek''': the specialized search engine for '''R''' topics: http://rseek.org/
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* '''R''' questions on stackoverflow:  http://stackoverflow.com/questions/tagged/r
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* The Comprehensive '''R''' Archive Network '''CRAN''':  http://cran.r-project.org/
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* The '''CRAN''' task-view collection: http://cran.r-project.org/web/views/
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* '''Bioconductor''' task views:  http://www.bioconductor.org/packages/release/BiocViews.html
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==Notes==
 
==Notes==

Revision as of 18:51, 18 August 2015

Introduction to R



 

Schedule

Please note: this schedule is a rough guideline only, we will be very flexible to adapt to class needs as we proceed.


Time Wednesday's Activities
09:00 – 10:30 Welcome, Introduction
Lecture and practicals: setup and environment
10:30 – 11:00 Coffee break
11:00 – 12:30 Lecture and practicals: R commands
12:30 – 13:30 Lunch break
13:30 – 15:00 Lecture and practicals: programming
15:00 – 15:30 Coffee break
13:30 – 15:00 Lecture and practicals: data


 

Setup

There may be a difference between R and R Studio regarding the location of installed packages.

We have noticed at previous workshops that RStudio couldn't find libraries that were not installed through the RStudio package manager. This appeared to have been version dependent, and may not affect current releases. You can check for this (in case you have problems running the library() command) by issuing the command ... 

.libPaths()

...in R as well as in R Studio. The path should be the same in both.

In case you need to "tell" RStudio the location, you can define the path in a startup file. Create or edit a file called .Renviron in your home directory. Inside there define: 

R_LIBS=<Library Path of R installed packages>

Alternatively, you could use the R Studio package manger to install libraries.



Task:

  1. Download the file below to your working directory;
  2. load the file in R Studio;
  3. proceed to the first CHECKPOINT in the script.

R_Intro_Module_1_First_steps.R



First steps

Script files for this section


 

Useful links


Notes



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