Difference between revisions of "BCB420 Week02 Tasks"
Jump to navigation
Jump to search
m |
m |
||
| Line 5: | Line 5: | ||
| − | + | ==In Class== | |
* Questions | * Questions | ||
| Line 29: | Line 29: | ||
---- | ---- | ||
| − | * Define | + | * Define [http://steipe.biochemistry.utoronto.ca/abc/students/index.php/BCB420_2015_Project_PlanClass Project] |
** Objectives | ** Objectives | ||
** Scope | ** Scope | ||
** Workflow | ** Workflow | ||
| − | ** Milestones | + | ** Milestones for [http://steipe.biochemistry.utoronto.ca/abc/students/index.php/BCB420_2015_Project_Plan#Preparations preparation phases I - III] |
** Work packages | ** Work packages | ||
| Line 44: | Line 44: | ||
** Version control | ** Version control | ||
| − | |||
| − | ;For next week | + | |
| + | | ||
| + | |||
| + | ==For next week== | ||
*Work through '''R Studio''' development tutorial (TBD) | *Work through '''R Studio''' development tutorial (TBD) | ||
*Work through '''github''' tutorial (TBD) | *Work through '''github''' tutorial (TBD) | ||
| Line 52: | Line 54: | ||
*Contribute to quiz questions | *Contribute to quiz questions | ||
*More ... TBD | *More ... TBD | ||
| + | |||
| + | |||
---- | ---- | ||
| − | |||
| | ||
Revision as of 19:11, 14 January 2015
Week 2 Tasks
In Class
- Questions
- Quiz 1 and pickup
- Explore system definitions and system discovery processes in submitted papers.
- Discuss data relationships for functional annotation
- Coexpression
- Perturbation response (chemogenomics)
- Interaction - physical and genetic
- Similar genomic context
- Gene fusion/fission events
- Homology
- Structure
- Colocation
- Literature
- GO annotation
- KEGG, Biocyc - other regulatory and metabolic pathways
- First principles from systems theory (???)
- Define Project
- Objectives
- Scope
- Workflow
- Milestones for preparation phases I - III
- Work packages
- Discuss
- Collaboration
- Development
- Testing
- Version control
For next week
- Work through R Studio development tutorial (TBD)
- Work through github tutorial (TBD)
- Complete project plan
- Contribute to quiz questions
- More ... TBD
