Difference between revisions of "BCB420 Week02 Tasks"
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*Explore system definitions and system discovery processes in submitted papers. | *Explore system definitions and system discovery processes in submitted papers. | ||
*Discuss data relationships for functional annotation | *Discuss data relationships for functional annotation | ||
| − | ** | + | ** Coexpression |
| − | ** | + | ** Perturbation response (chemogenomics) |
| − | ** | + | ** Interaction - physical and genetic |
| − | ** | + | ** Similar genomic context |
| − | ** | + | ** Gene fusion/fission events |
| − | ** | + | ** Homology |
| + | ** Structure | ||
| + | ** Colocation | ||
| + | ** Literature | ||
** GO annotation | ** GO annotation | ||
| + | ** KEGG, Biocyc - other regulatory and metabolic pathways | ||
| + | ** First principles from systems theory (???) | ||
*Define Class Project | *Define Class Project | ||
Revision as of 18:37, 14 January 2015
Week 2 Tasks
- Contents
- Quiz 1 and pickup
- Explore system definitions and system discovery processes in submitted papers.
- Discuss data relationships for functional annotation
- Coexpression
- Perturbation response (chemogenomics)
- Interaction - physical and genetic
- Similar genomic context
- Gene fusion/fission events
- Homology
- Structure
- Colocation
- Literature
- GO annotation
- KEGG, Biocyc - other regulatory and metabolic pathways
- First principles from systems theory (???)
- Define Class Project
- Objectives
- Scope
- Workflow
- Milestones
- Work packages
- Discuss
- Collaboration
- Development
- Testing
- Version control
- For next week
- Work through R Studio development tutorial (TBD)
- Work through github tutorial (TBD)
- Complete project plan
- Contribute to quiz questions
- More ... TBD
