Difference between revisions of "User:Boris/Temp/APB"

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<td>Jan. 16 - 21</td>
 
<td>Jan. 16 - 21</td>
 
<td>
 
<td>
−
* [[CSB_Web_tools|CSB on the Web: Databases and services]]
+
* Databases and tools
−
* [[CSB_Databases|GO, OMIM and other phenotype databases]]
+
** [[CSB_Web_tools|CSB on the Web: Databases and services]]
−
* [[Data_mining|Data mining]]
+
** [[CSB_Databases|GO, OMIM and other phenotype databases]]
−
* [[Data_integration|Data integration: Loose coupling, combining datasets to improve annotation quality, evidence combination]]
+
** [[Data_integration|Data integration: Loose coupling, combining datasets to improve annotation quality, evidence combination]]
−
* [[Function_prediction|Prediction of function]]
+
** [[Function_prediction|Prediction of function]]
 
</td>
 
</td>
 
<td>Quiz 1</td>
 
<td>Quiz 1</td>
 
<td>[[CSB_Assignment_Week_2|Assignment 2]]</td>
 
<td>[[CSB_Assignment_Week_2|Assignment 2]]</td>
 
</tr>
 
</tr>
 +
 +
<tr class="s1">
 +
<td>3</td>
 +
<td>Jan. 23 - 28</td>
 +
<td>
 +
* Working with -ome scale data
 +
** [[R_and_Bioconductor|R and Bioconductor]]
 +
** [[Clustering|Clustering and partitioning]]
 +
** [[Enrichment|Enrichment analysis]]
 +
** [[Data_mining|Data mining]]
 +
** [[Informal_programming|Informal programming with perl/php/MySQL/]]
 +
** [[IDE|IDE - Komodo]], [http://en.wikipedia.org/wiki/KDevelop KDevelop] (also Eclipse, except no Perl)
 +
</td>
 +
<td>Quiz 2, project concept due</td>
 +
<td>[[CSB_Assignment_Week_3|Assignment 3]]</td>
 +
</tr>
 +
  
 
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</tr>
 
</tr>
 
<!-- ===================    /TOPIC  ===================  -->
 
<!-- ===================    /TOPIC  ===================  -->
−
 
−
<tr class="s1">
 
−
<td>3</td>
 
−
<td>Jan. 23 - 28</td>
 
−
<td>
 
−
* Working with -ome scale data
 
−
** [[R_and_Bioconductor|R and Bioconductor]]
 
−
** [[Clustering|Clustering and partitioning]]
 
−
** [[Enrichment|Enrichment analysis]]
 
−
** [[Informal_programming|Informal programming with perl/php/MySQL/]]
 
−
** [[IDE|IDE - Komodo]], [http://en.wikipedia.org/wiki/KDevelop KDevelop] (also Eclipse, except no Perl)
 
−
</td>
 
−
<td>Quiz 2, project concept due</td>
 
−
<td>[[CSB_Assignment_Week_3|Assignment 3]]</td>
 
−
</tr>
 
  
 
<tr class="s2">
 
<tr class="s2">

Revision as of 15:57, 12 January 2012

Timetable and syllabus

I n t r o d u c t i o n
Week Date Contents Activities Assignment
1 Jan. 9 - 14 — Assignment 1
 
D a t a
Week Date Contents Activities Assignment
2 Jan. 16 - 21 Quiz 1 Assignment 2
3 Jan. 23 - 28 Quiz 2, project concept due Assignment 3
 
"-omics"
Week Date Contents Activities Assignment
4 Jan. 30 - Feb. 3 Quiz 3 Assignment 4
5 Feb. 6 - 10 Quiz 4, project outline due Assignment 5
 
I n t e r a c t i o n s ,   P a t h w a y s   a n d   N e t w o r k s
Week Date Contents Activities Assignment
6 Feb. 13 - 17
  • Cytoscape
  • Graph theory, graph types and metrics; small-world or random-geometric, date-hubs and party-hubs
 Quiz 5 Assignment 6
  Feb. 20 - 24 Reading Week - School closed
7 Feb. 27 - Mar. 2 Quiz 6 Assignment 7
 
S y s t e m s
Week Date Contents Activities Assignment
8 Mar. 5 - 9 Quiz 7 Assignment 8
9 Mar. 12 - 16 Quiz 8 Assignment 9
10 Mar. 19 - 23 Quiz 9, project final submission due Assignment 10
 
M o d e l s
Week Date Contents Activities Assignment
11 Mar. 26 - 30 — Assignment 11
12 Apr. 2 - 6 — Assignment 12


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