Difference between revisions of "Assignment 5 fallback data"

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−
==PHYLIP input data: Mbp1 orthologues==
+
==PHYLIP input data: All APSES domains (derived from Muscle-MSA)==
  
−
  16 55
+
  69 76
−
  MBP1_SACCERDFIHSTGNFAKAKTQRLHTATNSQTPLMLLHETVFGDVVFFSLQKTNKLSSLVK
+
  Mbp1_SACCEMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEK-FSVYDQLKPLF
−
  MBP1_CANGLKDFIHPTGNFAKAKMQRLHTAANANTPLMLLSETVFNDREFFSLQKTRKISELIS
+
Mbp1_ASHGOMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQK-FEVLEELRPLF
−
  MBP1_EREGOKEFLHPTGKFAKAKTGQHHTALNQATPLMLLQDTVFRDKKFFSTEKMHKINRLIE
+
Mbp1_ASPFUMRRRGDDWINATHILKVAGFDKPARTRILEREVQKGTHEKVQGGYGKYQGTWIPLHEGRLLAER-NNIIDKLRPIF
−
  MBP1_KLULAKDFIHPTGKFPKAKTQRHHTALNNVTPLIILKDTVFKDDQFYDLVKMRKLNQIID
+
Mbp1_ASPNIMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAER-NNILDKLLPIF
−
  MBP1_CANALTPFVTSEGKFPKAKIQRGNTIRNNNTPLMLLKESVLLNKKCIQMERTKLVDEISK
+
Mbp1_ASPTEMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAER-NNIIDKLRPIF
−
  MBP1_DEBHATPFVTLEGKFPKAKVQHGNTIKNNRTPLMLLFDSILLNKKCITYFKVENKENIKE
+
Mbp1_CANALMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARN-FGVYDVLKPIF
−
  MBP1_YARLITPFQCKNVGFDKPQVQSGHTATNMFTPLTILQDTLFGAKKVSMYFKLDLVDDVVE
+
Mbp1_CANGLMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEK-FDVYQDLKPLF
−
  MBP1_SCHPOVECFIKGVDFDKPQASSGHTSCNRLTPLMLLQSTIYGAMDCVQVRQMKDTLYIRK
+
Mbp1_COPCIMRRRSDSWLNATQILKVAGFDKPQRTRVLEREVQKGEHEKVQGGYGKYQGTWIPLERGMQLAKQ-YNCEHLLRPII
−
  MBP1_USTMATPCIINNVGLDKPQIETEHTAVNSNTALMSFTDPSLRSKRLVRANRLELVDKFVA
+
Mbp1_CRYNEMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQ-YGVGSYLSSVF
−
  MBP1_ASPNITPFKIGTDGFDKPAVSAGNTALSIHTPLVLLLDTISGVFRLVQAHGLAAVKELAQ
+
Mbp1_DEBHAMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKN-FGVFDSLRPIF
−
  MBP1_ASPTETPFKIEGDGFDKPAVSAGNTALSVHTPLVLLLDTVSGAFRLVSSYGAAAVKELAQ
+
Mbp1_GIBZEMRRRSDDWINATHILKAAGFDKPARTRILERDVQKDVHEKIQGGYGKYQGTWIPLESGQALAER-HSVIDRLRPIF
−
  MBP1_CRYNEVPAMIRGIGVHKSAISMGHSAGNYATPLILLSPSIRGNKGLVVSYGSEVLEDKIR
+
Mbp1_KLULAMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEK-FEVLDELKPLF
−
  MBP1_GIBZESDMEVNNIGVDKGKESRSHTAVNGSTALMVLGGTIEGNRSIIATEASKMVSALKG
+
Mbp1_MAGGRMRRRVDDWINATHILKAAGFDKPARTRILEREVQKDQHEKVQGGYGKYQGTWIPLEAGEALAHR-NNIFDRLRPIF
−
  MBP1_NEUCRTGMEVNNVNIDKGRENRSHTAVNACTALMLLGCTLDGNRSIITLHSTQAVAALQA
+
Mbp1_NEUCRMRRRHDDWVNATHILKAAGFDKPARTRILEREVQKDTHEKIQGGYGRYQGTWIPLEQAEALARR-NNIYERLKPIF
−
  MBP1_MAGGRVEFEVNGVGVEKGKEQRCHTAVNTSTPLMILGNTMEGNRSIITLHSQQSVVALKG
+
Mbp1_PICSTMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLELGRDIAKN-FGVFDILKPIF
−
  MBP1_ASPFUVSMEVNGVGVVKARERKRNNALNGATALQVLAPTIDRSV-LVSLHATEILAEVDR
+
Mbp1_SCHPOMKRCHDNWLNATQILKIAELDKPRRTRILEKFAQKGLHEKIQGGCGKYQGTWVPSERAVELAHE-YNVFDLIQPLI
 +
Mbp1_USTMAMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAER-YNIQGLLQPIT
 +
Mbp1_YARLIMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATL-YDVDSHLAPIF
 +
Swi4_ASHGOMRRLHDDWVNITQVFKVATFSKTQRTKILEKESADISHEKIQGGYGRFQGTWIPLDSAKGLVAK-YEITDIVV---
 +
  Sok2_ASHGOVRRADNDMINGTKLLNVAKMTRGRRDGILKAEK---VRHVVKIGSMHLKGVWIPFERALALAQR-EKIVDMLFPLF
 +
  MbpB_ASPFUMWDYNIGLVRTTHLFKCNDYS-----KMLNANPLREICHSITGGALAAQGYWMPYEAAKAVAATFWKIRHALTPLF
 +
MbpA_ASPFUMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCRE-YHVEELLRPLL
 +
  Sok2_ASPFUARREDNHMINGTKLLNVAGMTRGRRDGILKSEK---VRHVVKIGPMHLKGVWIPFERALEFANK-EKITDLLYPLF
 +
MbpB_ASPNISWDYNVGLVLTRSLFKCNGHPKTAPAKVLKMNPLGDISHSITGGALVGQGYWMPFRAAKALATTFWNIRFVLTPMF
 +
SokB_ASPNIMWDYNIGLVRTTHLFKCNDYSKTTPAKMLNQNPLRDICHSITGGALAAQGYWMPYEAAKAIAATFWKIRFALTPLF
 +
MbpA_ASPNIMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCRE-YHVEELLRPLL
 +
SokA_ASPNIARREDNGMINGTKLLNVAGMTRGRRDGILKSEK---VRNVVKIGPMHLKGVWIPFDRALEFANK-EKITDLLYPLF
 +
  Sok2_ASPNIARREDNHMINGTKLLNVAGMTRGRRDGILKSEK---VRHVVKIGPMHLKGVWIPFERALEFANK-EKITDLLYPLF
 +
  MbpB_ASPTEMWDYNIGLVRTTPLFRSQNYSKTTPAKVLDANPLREISHSITGGAIVAQGYWIPFEAAKAVAATFWRIRYALTPIF
 +
  MbpA_ASPTEMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVDLCRE-YHVEELLRPLL
 +
  Sok2_ASPTEARREDNSMINGTKLLNVAGMTRGRRDGILKSEK---IRHVVKIGPMHLKGVWIPFERALEFANK-EKITDLLYPLF
 +
  MbpC_CANALLRRVQDSFVNVTQLFQILVLPTSQVDNYFDNEILSNLKYFGSSSYLDLRGIWIPYDKAVNLALK-FDIYEITKKLF
 +
  MbpB_CANALIWDYETGWVHLTGIWKASGSNKADIVKLLESTPYQQYIKRIRGGFLKIQGTWLPYKLCKILARRFYYLRYSLIPIF
 +
  MbpA_CANALMRRCKDDWVNATQILKCCNFPKAKRTKILEKGVQQGLHEKVQGGFGRFQGTWIPLEDARKLAKT-YGVTEELAPVL
 +
  Sok2_CANALSRREDTNYINGTKLLNVIGMTRGKRDGILKTEK---IKNVVKVGSMNLKGVWIPFDRAYEIARN-EGVDSLLYPLF
 +
  Phd1_CANALVRRADNNMINGTKLLNVAQMTRGRRDGILKSEK---VRHVVKIGSMHLKGVWIPFERALAMAQR-EQIVDMLYPLF
 +
  SokA_CANGLVRRADNDMVNGTKLLNVTGMTRGRRDGILKNEP---VRDVVKGGPMTLKGVWIPIDRARAIARQ-EGIEQWLYPLF
 +
  Swi4_CANGLMRRTMDDWVNVTQVFKIAQFSKTQRTKILEKESTNMKHEKVQGGYGRFQGTWVPLEAAKFMTTK-YNIDNVVNTIL
 +
  Sok2_CANGLVRRADNDMINGTKLLNVTKMTRGKRDGILRSEK---YRKVVKIGSMHLKGVWIPFERALFIAKR-EKIVDLLYPLF
 +
MbpA_COPCIMMDIDDGYILWTGIWKALGNSKADIVKMIDSQPLAPLIRRVRGGYLKIQGTWMPYEVALKLSRRVWPIRHDLVPLF
 +
MbpA_CRYNEMRRRSDAYLNATQILKVAGFDKPQRTRVLEREVQKGEHEKVQGGYGKYQGTWIPIERGLALAKQ-YGVEDILRPII
 +
MbpB_DEBHAIWDYETGFVHLTGIWKASRNLKADIVKLLESTPYHQHIKRIRGGFLKIQGTWLPFDLCKMLAKRFYHIRFQLIPIF
 +
Swi4_DEBHALRRVQDSYINISQLFSILHLSEAQLTNFLNNEILTNTQYLSSGGFNDLRGLWIPYDRAVSLALK-FDIYELAKSLF
 +
MbpA_DEBHAMRRCKDDWVNATQILKCCNFPKAKRTKILEKGVQQGLHEKIQGGYGRFQGTWIPLADAQRLAAS-YGVTPDLAPVL
 +
SokA_DEBHASRREDTNYVNGTKLLNVAGMTRGKRDGILKTEK---TKSVVKVGAMNLKGVWIPFERASEIARN-EGIDGLLYPLF
 +
Sok2_DEBHAVRRADNNMINGTKLLNVAQMTRGRRDGILKSEK---VRHVVKIGSMHLKGVWIPFERALAMAQR-EGIVDLLYPLF
 +
MbpB_GIBZEMWDYNIGLVRMTPFFKCRGYGKTIPAKMLGLNPLKEITHSITGGSIAAQGYWMPYRCAKAICATFHPIAGALIPIF
 +
MbpA_GIBZEMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQ-YGVEELLRPLL
 +
Sok2_GIBZEARREDNHMINGTKLLNVAGMTRGRRDGILKSEK---VRHVVKIGPMHLKGVWIPYDRALDFANK-EKITELLYPLF
 +
Swi4_KLULAMRRCNDNWLNITQVFKAGSFTKAQRTKILEKEANEIKHEKIQGGYGRFQGTWIPWESTKYLVEK-YNINNVVKRIV
 +
Sok2_KLULAVRRADNDMINGTKLLNVTRMTRGRRDGILKAEK---IRHVVKIGSMHLKGVWIPFERALVMAQR-EKIVDLLYALF
 +
MbpB_MAGGRMWDYGCGLVRMTHFFKCRGYTKTVPGKVLNQNHLKDITYSITGGSISAQGYWMPFACARAVCATFHPIAGALIPIF
 +
MbpA_MAGGRMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQ-YGVEELLRPLL
 +
Sok2_MAGGRARREDNHMINGTKLLNVAGMTRGRRDGILKSEK---MRHVVKIGPMHLKGVWIPFERALDFANK-EKITELLYPLF
 +
MbpA_NEUCRMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQ-YGVEELLSKLL
 +
MbpA_PICSTMRRCKDDWVNATQILKCCNFPKAKRTKILEKGVQQGLHEKVQGGFGRFQGTWIPLPDAQRLATM-YGVTADAAPVL
 +
SokA_PICSTSRREDTNFVNGTKLLNVIGMTRGKRDGILKTEK---TRNVVKVGSMNLKGVWIPFDRAFEIARN-EGVDEALHPLF
 +
Sok2_PICSTVRRADNNMINGTKLLNVAQMTRGRRDGILKSEK---VRHVVKIGSMHLKGVWIPFERALAMAQR-EGIVDLLYPLF
 +
Sok2_SACCEVRRADNDMVNGTKLLNVTKMTRGRRDGILKAEK---IRHVVKIGSMHLKGVWIPFERALAIAQR-EKIADYLYPLF
 +
Phd1_SACCEVRRADNNMINGTKLLNVTKMTRGRRDGILRSEK---VREVVKIGSMHLKGVWIPFERAYILAQR-EQILDHLYPLF
 +
Swi4_SACCEMRRTKDDWINITQVFKIAQFSKTKRTKILEKESNDMQHEKVQGGYGRFQGTWIPLDSAKFLVNK-YEIIDVVNSIL
 +
MbpB_SCHPOLRRCPDSYFNISQILRLAGTSSSENAKELDDIIESGDYENVDSKHPQIDGVWVPYDRAISIAKR-YGVYEILQPLI
 +
MbpA_SCHPOMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATK-YKVDGIMSPIL
 +
MbpA_USTMAMIDVDTSFVRFTSITQALGKNKVNFGRLVKTCPLDPHITKLKGGYLSIQGTWLPFDLAKELSRRIWEIRDHLVPLF
 +
Swi4_USTMAMRRRGDGWLNATQILKIAGIEKTRRTKILEKSILTGEHEKIQGGYGKFQGTWIPLQRAQQVAAE-YNVSHLLQPIL
 +
MbpB_YARLIIWDYHTGYVHLTGLWKAIGNSKADIVKLIDNSPLEAVIRRVRGGYLKIQGTWVPYDIARALASRTYFIRFALIPLF
 +
MbpA_YARLIMRRRTDSSLNATQILKVAGVEKSKRTKILEKEILTGAHEKVQGGYGKYQGTWIPYERGVDLCRQ-YSVYDVLQPLL
 +
SokA_YARLIARREDNDMINGTKLLNVAGMTRGRRDGILKGEK---LRHVVKAGAMHLKGVWIPYDRALEFANK-EKIIDLLFPLF
 +
Sok2_YARLIARREDNNMINGTKLLNVVGMTRGRRDGILKTEK---IRHVVKIGAMHLKGVWIPYERALAFAQR-ERIVDVLYPLF
  
 
==PHYLIP distance matrix: Mbp1 orthologues==
 
==PHYLIP distance matrix: Mbp1 orthologues==

Revision as of 20:05, 27 November 2007

 

Please remember: if you use information from this page as a fallback for technical problems with the assignment, you must document this in your submission. State what you tried, what didn't work and only then use the data from here.

   


PHYLIP input data: All APSES domains (derived from Muscle-MSA)

69  76
Mbp1_SACCEMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEK-FSVYDQLKPLF
Mbp1_ASHGOMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQK-FEVLEELRPLF
Mbp1_ASPFUMRRRGDDWINATHILKVAGFDKPARTRILEREVQKGTHEKVQGGYGKYQGTWIPLHEGRLLAER-NNIIDKLRPIF
Mbp1_ASPNIMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAER-NNILDKLLPIF
Mbp1_ASPTEMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAER-NNIIDKLRPIF
Mbp1_CANALMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARN-FGVYDVLKPIF
Mbp1_CANGLMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEK-FDVYQDLKPLF
Mbp1_COPCIMRRRSDSWLNATQILKVAGFDKPQRTRVLEREVQKGEHEKVQGGYGKYQGTWIPLERGMQLAKQ-YNCEHLLRPII
Mbp1_CRYNEMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQ-YGVGSYLSSVF
Mbp1_DEBHAMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKN-FGVFDSLRPIF
Mbp1_GIBZEMRRRSDDWINATHILKAAGFDKPARTRILERDVQKDVHEKIQGGYGKYQGTWIPLESGQALAER-HSVIDRLRPIF
Mbp1_KLULAMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEK-FEVLDELKPLF
Mbp1_MAGGRMRRRVDDWINATHILKAAGFDKPARTRILEREVQKDQHEKVQGGYGKYQGTWIPLEAGEALAHR-NNIFDRLRPIF
Mbp1_NEUCRMRRRHDDWVNATHILKAAGFDKPARTRILEREVQKDTHEKIQGGYGRYQGTWIPLEQAEALARR-NNIYERLKPIF
Mbp1_PICSTMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLELGRDIAKN-FGVFDILKPIF
Mbp1_SCHPOMKRCHDNWLNATQILKIAELDKPRRTRILEKFAQKGLHEKIQGGCGKYQGTWVPSERAVELAHE-YNVFDLIQPLI
Mbp1_USTMAMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAER-YNIQGLLQPIT
Mbp1_YARLIMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATL-YDVDSHLAPIF
Swi4_ASHGOMRRLHDDWVNITQVFKVATFSKTQRTKILEKESADISHEKIQGGYGRFQGTWIPLDSAKGLVAK-YEITDIVV---
Sok2_ASHGOVRRADNDMINGTKLLNVAKMTRGRRDGILKAEK---VRHVVKIGSMHLKGVWIPFERALALAQR-EKIVDMLFPLF
MbpB_ASPFUMWDYNIGLVRTTHLFKCNDYS-----KMLNANPLREICHSITGGALAAQGYWMPYEAAKAVAATFWKIRHALTPLF
MbpA_ASPFUMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCRE-YHVEELLRPLL
Sok2_ASPFUARREDNHMINGTKLLNVAGMTRGRRDGILKSEK---VRHVVKIGPMHLKGVWIPFERALEFANK-EKITDLLYPLF
MbpB_ASPNISWDYNVGLVLTRSLFKCNGHPKTAPAKVLKMNPLGDISHSITGGALVGQGYWMPFRAAKALATTFWNIRFVLTPMF
SokB_ASPNIMWDYNIGLVRTTHLFKCNDYSKTTPAKMLNQNPLRDICHSITGGALAAQGYWMPYEAAKAIAATFWKIRFALTPLF
MbpA_ASPNIMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCRE-YHVEELLRPLL
SokA_ASPNIARREDNGMINGTKLLNVAGMTRGRRDGILKSEK---VRNVVKIGPMHLKGVWIPFDRALEFANK-EKITDLLYPLF
Sok2_ASPNIARREDNHMINGTKLLNVAGMTRGRRDGILKSEK---VRHVVKIGPMHLKGVWIPFERALEFANK-EKITDLLYPLF
MbpB_ASPTEMWDYNIGLVRTTPLFRSQNYSKTTPAKVLDANPLREISHSITGGAIVAQGYWIPFEAAKAVAATFWRIRYALTPIF
MbpA_ASPTEMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVDLCRE-YHVEELLRPLL
Sok2_ASPTEARREDNSMINGTKLLNVAGMTRGRRDGILKSEK---IRHVVKIGPMHLKGVWIPFERALEFANK-EKITDLLYPLF
MbpC_CANALLRRVQDSFVNVTQLFQILVLPTSQVDNYFDNEILSNLKYFGSSSYLDLRGIWIPYDKAVNLALK-FDIYEITKKLF
MbpB_CANALIWDYETGWVHLTGIWKASGSNKADIVKLLESTPYQQYIKRIRGGFLKIQGTWLPYKLCKILARRFYYLRYSLIPIF
MbpA_CANALMRRCKDDWVNATQILKCCNFPKAKRTKILEKGVQQGLHEKVQGGFGRFQGTWIPLEDARKLAKT-YGVTEELAPVL
Sok2_CANALSRREDTNYINGTKLLNVIGMTRGKRDGILKTEK---IKNVVKVGSMNLKGVWIPFDRAYEIARN-EGVDSLLYPLF
Phd1_CANALVRRADNNMINGTKLLNVAQMTRGRRDGILKSEK---VRHVVKIGSMHLKGVWIPFERALAMAQR-EQIVDMLYPLF
SokA_CANGLVRRADNDMVNGTKLLNVTGMTRGRRDGILKNEP---VRDVVKGGPMTLKGVWIPIDRARAIARQ-EGIEQWLYPLF
Swi4_CANGLMRRTMDDWVNVTQVFKIAQFSKTQRTKILEKESTNMKHEKVQGGYGRFQGTWVPLEAAKFMTTK-YNIDNVVNTIL
Sok2_CANGLVRRADNDMINGTKLLNVTKMTRGKRDGILRSEK---YRKVVKIGSMHLKGVWIPFERALFIAKR-EKIVDLLYPLF
MbpA_COPCIMMDIDDGYILWTGIWKALGNSKADIVKMIDSQPLAPLIRRVRGGYLKIQGTWMPYEVALKLSRRVWPIRHDLVPLF
MbpA_CRYNEMRRRSDAYLNATQILKVAGFDKPQRTRVLEREVQKGEHEKVQGGYGKYQGTWIPIERGLALAKQ-YGVEDILRPII
MbpB_DEBHAIWDYETGFVHLTGIWKASRNLKADIVKLLESTPYHQHIKRIRGGFLKIQGTWLPFDLCKMLAKRFYHIRFQLIPIF
Swi4_DEBHALRRVQDSYINISQLFSILHLSEAQLTNFLNNEILTNTQYLSSGGFNDLRGLWIPYDRAVSLALK-FDIYELAKSLF
MbpA_DEBHAMRRCKDDWVNATQILKCCNFPKAKRTKILEKGVQQGLHEKIQGGYGRFQGTWIPLADAQRLAAS-YGVTPDLAPVL
SokA_DEBHASRREDTNYVNGTKLLNVAGMTRGKRDGILKTEK---TKSVVKVGAMNLKGVWIPFERASEIARN-EGIDGLLYPLF
Sok2_DEBHAVRRADNNMINGTKLLNVAQMTRGRRDGILKSEK---VRHVVKIGSMHLKGVWIPFERALAMAQR-EGIVDLLYPLF
MbpB_GIBZEMWDYNIGLVRMTPFFKCRGYGKTIPAKMLGLNPLKEITHSITGGSIAAQGYWMPYRCAKAICATFHPIAGALIPIF
MbpA_GIBZEMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQ-YGVEELLRPLL
Sok2_GIBZEARREDNHMINGTKLLNVAGMTRGRRDGILKSEK---VRHVVKIGPMHLKGVWIPYDRALDFANK-EKITELLYPLF
Swi4_KLULAMRRCNDNWLNITQVFKAGSFTKAQRTKILEKEANEIKHEKIQGGYGRFQGTWIPWESTKYLVEK-YNINNVVKRIV
Sok2_KLULAVRRADNDMINGTKLLNVTRMTRGRRDGILKAEK---IRHVVKIGSMHLKGVWIPFERALVMAQR-EKIVDLLYALF
MbpB_MAGGRMWDYGCGLVRMTHFFKCRGYTKTVPGKVLNQNHLKDITYSITGGSISAQGYWMPFACARAVCATFHPIAGALIPIF
MbpA_MAGGRMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQ-YGVEELLRPLL
Sok2_MAGGRARREDNHMINGTKLLNVAGMTRGRRDGILKSEK---MRHVVKIGPMHLKGVWIPFERALDFANK-EKITELLYPLF
MbpA_NEUCRMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQ-YGVEELLSKLL
MbpA_PICSTMRRCKDDWVNATQILKCCNFPKAKRTKILEKGVQQGLHEKVQGGFGRFQGTWIPLPDAQRLATM-YGVTADAAPVL
SokA_PICSTSRREDTNFVNGTKLLNVIGMTRGKRDGILKTEK---TRNVVKVGSMNLKGVWIPFDRAFEIARN-EGVDEALHPLF
Sok2_PICSTVRRADNNMINGTKLLNVAQMTRGRRDGILKSEK---VRHVVKIGSMHLKGVWIPFERALAMAQR-EGIVDLLYPLF
Sok2_SACCEVRRADNDMVNGTKLLNVTKMTRGRRDGILKAEK---IRHVVKIGSMHLKGVWIPFERALAIAQR-EKIADYLYPLF
Phd1_SACCEVRRADNNMINGTKLLNVTKMTRGRRDGILRSEK---VREVVKIGSMHLKGVWIPFERAYILAQR-EQILDHLYPLF
Swi4_SACCEMRRTKDDWINITQVFKIAQFSKTKRTKILEKESNDMQHEKVQGGYGRFQGTWIPLDSAKFLVNK-YEIIDVVNSIL
MbpB_SCHPOLRRCPDSYFNISQILRLAGTSSSENAKELDDIIESGDYENVDSKHPQIDGVWVPYDRAISIAKR-YGVYEILQPLI
MbpA_SCHPOMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATK-YKVDGIMSPIL
MbpA_USTMAMIDVDTSFVRFTSITQALGKNKVNFGRLVKTCPLDPHITKLKGGYLSIQGTWLPFDLAKELSRRIWEIRDHLVPLF
Swi4_USTMAMRRRGDGWLNATQILKIAGIEKTRRTKILEKSILTGEHEKIQGGYGKFQGTWIPLQRAQQVAAE-YNVSHLLQPIL
MbpB_YARLIIWDYHTGYVHLTGLWKAIGNSKADIVKLIDNSPLEAVIRRVRGGYLKIQGTWVPYDIARALASRTYFIRFALIPLF
MbpA_YARLIMRRRTDSSLNATQILKVAGVEKSKRTKILEKEILTGAHEKVQGGYGKYQGTWIPYERGVDLCRQ-YSVYDVLQPLL
SokA_YARLIARREDNDMINGTKLLNVAGMTRGRRDGILKGEK---LRHVVKAGAMHLKGVWIPYDRALEFANK-EKIIDLLFPLF
Sok2_YARLIARREDNNMINGTKLLNVVGMTRGRRDGILKTEK---IRHVVKIGAMHLKGVWIPYERALAFAQR-ERIVDVLYPLF

PHYLIP distance matrix: Mbp1 orthologues

   16
MBP1_SACCE  0.000000  0.340197  0.641436  0.698015  1.217853  1.575914
  1.679015  1.734556  2.205033  2.021848  2.012439  2.665819  1.676493
  1.594736  1.572812  1.998416
MBP1_CANGL  0.340197  0.000000  0.573520  0.606792  1.101098  1.571271
  1.788034  2.092392  1.858878  2.098264  2.010324  2.531040  1.531216
  1.410911  1.432764  2.300807
MBP1_EREGO  0.641436  0.573520  0.000000  0.537044  1.273771  1.429173
  1.510184  1.805609  1.780957  1.919228  1.961973  2.827827  1.791314
  2.121850  1.882121  2.853653
MBP1_KLULA  0.698015  0.606792  0.537044  0.000000  1.191955  1.453182
  1.674717  2.266314  2.264786  2.478006  2.696935  3.451189  2.487955
  2.758670  2.041124  2.617325
MBP1_CANAL  1.217853  1.101098  1.273771  1.191955  0.000000  0.540067
  1.525822  1.826937  1.371732  1.702409  1.765129  1.921376  1.853606
  2.028292  1.834001  2.184056
MBP1_DEBHA  1.575914  1.571271  1.429173  1.453182  0.540067  0.000000
  1.366472  2.111250  1.907877  2.038152  1.842951  2.041502  2.818372
  2.349724  1.893817  3.091846
MBP1_YARLI  1.679015  1.788034  1.510184  1.674717  1.525822  1.366472
  0.000000  1.458949  1.099978  1.258665  1.245131  1.791822  1.892723
  1.798693  1.546586  2.470074
MBP1_SCHPO  1.734556  2.092392  1.805609  2.266314  1.826937  2.111250
  1.458949  0.000000  1.965611  1.650181  1.760901  1.882590  1.829431
  1.798599  1.652280  2.232678
MBP1_USTMA  2.205033  1.858878  1.780957  2.264786  1.371732  1.907877
  1.099978  1.965611  0.000000  1.361737  1.543623  1.598177  1.516216
  1.508336  1.687661  1.953468
MBP1_ASPNI  2.021848  2.098264  1.919228  2.478006  1.702409  2.038152
  1.258665  1.650181  1.361737  0.000000  0.183195  1.506196  2.082772
  1.858936  1.901732  2.043755
MBP1_ASPTE  2.012439  2.010324  1.961973  2.696935  1.765129  1.842951
  1.245131  1.760901  1.543623  0.183195  0.000000  1.320001  1.972475
  1.766234  1.810925  1.734993
MBP1_CRYNE  2.665819  2.531040  2.827827  3.451189  1.921376  2.041502
  1.791822  1.882590  1.598177  1.506196  1.320001  0.000000  1.606068
  1.876348  1.696345  1.378680
MBP1_GIBZE  1.676493  1.531216  1.791314  2.487955  1.853606  2.818372
  1.892723  1.829431  1.516216  2.082772  1.972475  1.606068  0.000000
  0.497095  0.523613  1.052197
MBP1_NEUCR  1.594736  1.410911  2.121850  2.758670  2.028292  2.349724
  1.798693  1.798599  1.508336  1.858936  1.766234  1.876348  0.497095
  0.000000  0.488870  1.020647
MBP1_MAGGR  1.572812  1.432764  1.882121  2.041124  1.834001  1.893817
  1.546586  1.652280  1.687661  1.901732  1.810925  1.696345  0.523613
  0.488870  0.000000  1.108262
MBP1_ASPFU  1.998416  2.300807  2.853653  2.617325  2.184056  3.091846
  2.470074  2.232678  1.953468  2.043755  1.734993  1.378680  1.052197
  1.020647  1.108262  0.000000


PHYLIP input data: Mbp1 APSES domains

16  84
MBP1_SACCESIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDG
MBP1_CANGLSIMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEKFDVYQDLKPLFDFSEENG
MBP1_EREGOSIMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQKFEVLEELRPLFDFTRRDG
MBP1_KLULASIMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEKFEVLDELKPLFDFTQQEG
MBP1_CANALPIMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARNFGVYDVLKPIFEFQYIEG
MBP1_DEBHAPIMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKNFGVFDSLRPIFEFTYVEG
MBP1_YARLIAVMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATLYDVDSHLAPIFNYDDEDG
MBP1_SCHPOSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEG
MBP1_USTMAAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPS--
MBP1_ASPNISVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVA--G
MBP1_ASPTESVMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAERNNIIDKLRPIFDYVA--G
MBP1_CRYNESVMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQYGVGSYLSSVFDFVPSAS
MBP1_GIBZEAVMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQYGVEELLRPLLTYDMGQD
MBP1_NEUCRAVMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQYGVEELLSKLLTHNRGQE
MBP1_MAGGRAVMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQYGVEELLRPLLEYNRNPD
MBP1_ASPFUAVMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCREYHVEELLRPLLEYDMGPN

PHYLIP distance matrix: Mbp1 APSES domains

   16
MBP1_SACCE  0.000000  0.170047  0.205399  0.247219  0.487569  0.524603
  0.579198  0.798266  0.690172  0.527376  0.544473  0.657178  0.895524
  0.862050  0.905898  0.907783
MBP1_CANGL  0.170047  0.000000  0.279198  0.319549  0.559059  0.573474
  0.519177  0.789154  0.733572  0.615596  0.625874  0.665870  0.899041
  0.880370  0.935112  0.883959
MBP1_EREGO  0.205399  0.279198  0.000000  0.182532  0.544175  0.510304
  0.585979  0.846715  0.738784  0.557436  0.539410  0.674472  0.880525
  0.873348  0.850046  0.864623
MBP1_KLULA  0.247219  0.319549  0.182532  0.000000  0.467085  0.453277
  0.638363  0.813078  0.772358  0.567769  0.575968  0.690719  0.852917
  0.882337  0.830886  0.904034
MBP1_CANAL  0.487569  0.559059  0.544175  0.467085  0.000000  0.120290
  0.589271  0.686670  0.799405  0.647996  0.639552  0.681593  0.746085
  0.792284  0.817362  0.869237
MBP1_DEBHA  0.524603  0.573474  0.510304  0.453277  0.120290  0.000000
  0.555420  0.667709  0.800353  0.592738  0.583278  0.641173  0.744716
  0.811525  0.809515  0.839041
MBP1_YARLI  0.579198  0.519177  0.585979  0.638363  0.589271  0.555420
  0.000000  0.473875  0.462053  0.388599  0.421408  0.503568  0.581799
  0.593335  0.676734  0.691392
MBP1_SCHPO  0.798266  0.789154  0.846715  0.813078  0.686670  0.667709
  0.473875  0.000000  0.532761  0.545135  0.573415  0.643554  0.593169
  0.603559  0.762385  0.624657
MBP1_USTMA  0.690172  0.733572  0.738784  0.772358  0.799405  0.800353
  0.462053  0.532761  0.000000  0.346127  0.383120  0.560953  0.597524
  0.682290  0.675589  0.672514
MBP1_ASPNI  0.527376  0.615596  0.557436  0.567769  0.647996  0.592738
  0.388599  0.545135  0.346127  0.000000  0.064477  0.503545  0.673114
  0.778854  0.845557  0.762898
MBP1_ASPTE  0.544473  0.625874  0.539410  0.575968  0.639552  0.583278
  0.421408  0.573415  0.383120  0.064477  0.000000  0.534114  0.699665
  0.812899  0.847328  0.802412
MBP1_CRYNE  0.657178  0.665870  0.674472  0.690719  0.681593  0.641173
  0.503568  0.643554  0.560953  0.503545  0.534114  0.000000  0.650085
  0.653523  0.713330  0.695510
MBP1_GIBZE  0.895524  0.899041  0.880525  0.852917  0.746085  0.744716
  0.581799  0.593169  0.597524  0.673114  0.699665  0.650085  0.000000
  0.227631  0.185991  0.289073
MBP1_NEUCR  0.862050  0.880370  0.873348  0.882337  0.792284  0.811525
  0.593335  0.603559  0.682290  0.778854  0.812899  0.653523  0.227631
  0.000000  0.330632  0.480412
MBP1_MAGGR  0.905898  0.935112  0.850046  0.830886  0.817362  0.809515
  0.676734  0.762385  0.675589  0.845557  0.847328  0.713330  0.185991
  0.330632  0.000000  0.316199
MBP1_ASPFU  0.907783  0.883959  0.864623  0.904034  0.869237  0.839041
  0.691392  0.624657  0.672514  0.762898  0.802412  0.695510  0.289073
  0.480412  0.316199  0.000000

[end]

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