Lecture 21

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Microarray Analysis

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(Some of the slides in this lecture are based on material delivered by John Quackenbush at the February 2006 CBW workshop in Toronto.)

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Rogojina et al. (2003) Use of Affymetrix to spotted oligonucleotide microarrays using two retinal epithelial cell lines. Molecular Vision 9:482-96

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Writeup in Pertea et al. (2003) Bioinformatics 19:651-652

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(From J. Quackenbush) Bulk of genes lie on zero-line but there is evidence of differential expression

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Variance stabilization is available e.g. within the MIDAS package.

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Synonymous: Expression profile

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