Difference between revisions of "Homology modeling fallback data"

From "A B C"
Jump to navigation Jump to search
Line 1: Line 1:
 +
 
 +
<div style="padding: 5px; background: #D3D8E8;  border:solid 1px #AAAAAA;">
 +
Please remember: if you use information from this page as a '''fallback for technical problems with the assignment''', you must document this in your submission. State what you tried, what didn't work and only then use the data from here.
 +
</div>
 +
&nbsp;
 +
&nbsp;
 +
__TOC__
 +
 +
 
==PHYLIP input data: Mbp1 orthologues==
 
==PHYLIP input data: Mbp1 orthologues==
  

Revision as of 06:01, 7 December 2006

 

Please remember: if you use information from this page as a fallback for technical problems with the assignment, you must document this in your submission. State what you tried, what didn't work and only then use the data from here.

   


PHYLIP input data: Mbp1 orthologues

16  55 
MBP1_SACCERDFIHSTGNFAKAKTQRLHTATNSQTPLMLLHETVFGDVVFFSLQKTNKLSSLVK
MBP1_CANGLKDFIHPTGNFAKAKMQRLHTAANANTPLMLLSETVFNDREFFSLQKTRKISELIS
MBP1_EREGOKEFLHPTGKFAKAKTGQHHTALNQATPLMLLQDTVFRDKKFFSTEKMHKINRLIE
MBP1_KLULAKDFIHPTGKFPKAKTQRHHTALNNVTPLIILKDTVFKDDQFYDLVKMRKLNQIID
MBP1_CANALTPFVTSEGKFPKAKIQRGNTIRNNNTPLMLLKESVLLNKKCIQMERTKLVDEISK
MBP1_DEBHATPFVTLEGKFPKAKVQHGNTIKNNRTPLMLLFDSILLNKKCITYFKVENKENIKE
MBP1_YARLITPFQCKNVGFDKPQVQSGHTATNMFTPLTILQDTLFGAKKVSMYFKLDLVDDVVE
MBP1_SCHPOVECFIKGVDFDKPQASSGHTSCNRLTPLMLLQSTIYGAMDCVQVRQMKDTLYIRK
MBP1_USTMATPCIINNVGLDKPQIETEHTAVNSNTALMSFTDPSLRSKRLVRANRLELVDKFVA
MBP1_ASPNITPFKIGTDGFDKPAVSAGNTALSIHTPLVLLLDTISGVFRLVQAHGLAAVKELAQ
MBP1_ASPTETPFKIEGDGFDKPAVSAGNTALSVHTPLVLLLDTVSGAFRLVSSYGAAAVKELAQ
MBP1_CRYNEVPAMIRGIGVHKSAISMGHSAGNYATPLILLSPSIRGNKGLVVSYGSEVLEDKIR
MBP1_GIBZESDMEVNNIGVDKGKESRSHTAVNGSTALMVLGGTIEGNRSIIATEASKMVSALKG
MBP1_NEUCRTGMEVNNVNIDKGRENRSHTAVNACTALMLLGCTLDGNRSIITLHSTQAVAALQA
MBP1_MAGGRVEFEVNGVGVEKGKEQRCHTAVNTSTPLMILGNTMEGNRSIITLHSQQSVVALKG
MBP1_ASPFUVSMEVNGVGVVKARERKRNNALNGATALQVLAPTIDRSV-LVSLHATEILAEVDR

PHYLIP distance matrix: Mbp1 orthologues

   16
MBP1_SACCE  0.000000  0.340197  0.641436  0.698015  1.217853  1.575914
  1.679015  1.734556  2.205033  2.021848  2.012439  2.665819  1.676493
  1.594736  1.572812  1.998416
MBP1_CANGL  0.340197  0.000000  0.573520  0.606792  1.101098  1.571271
  1.788034  2.092392  1.858878  2.098264  2.010324  2.531040  1.531216
  1.410911  1.432764  2.300807
MBP1_EREGO  0.641436  0.573520  0.000000  0.537044  1.273771  1.429173
  1.510184  1.805609  1.780957  1.919228  1.961973  2.827827  1.791314
  2.121850  1.882121  2.853653
MBP1_KLULA  0.698015  0.606792  0.537044  0.000000  1.191955  1.453182
  1.674717  2.266314  2.264786  2.478006  2.696935  3.451189  2.487955
  2.758670  2.041124  2.617325
MBP1_CANAL  1.217853  1.101098  1.273771  1.191955  0.000000  0.540067
  1.525822  1.826937  1.371732  1.702409  1.765129  1.921376  1.853606
  2.028292  1.834001  2.184056
MBP1_DEBHA  1.575914  1.571271  1.429173  1.453182  0.540067  0.000000
  1.366472  2.111250  1.907877  2.038152  1.842951  2.041502  2.818372
  2.349724  1.893817  3.091846
MBP1_YARLI  1.679015  1.788034  1.510184  1.674717  1.525822  1.366472
  0.000000  1.458949  1.099978  1.258665  1.245131  1.791822  1.892723
  1.798693  1.546586  2.470074
MBP1_SCHPO  1.734556  2.092392  1.805609  2.266314  1.826937  2.111250
  1.458949  0.000000  1.965611  1.650181  1.760901  1.882590  1.829431
  1.798599  1.652280  2.232678
MBP1_USTMA  2.205033  1.858878  1.780957  2.264786  1.371732  1.907877
  1.099978  1.965611  0.000000  1.361737  1.543623  1.598177  1.516216
  1.508336  1.687661  1.953468
MBP1_ASPNI  2.021848  2.098264  1.919228  2.478006  1.702409  2.038152
  1.258665  1.650181  1.361737  0.000000  0.183195  1.506196  2.082772
  1.858936  1.901732  2.043755
MBP1_ASPTE  2.012439  2.010324  1.961973  2.696935  1.765129  1.842951
  1.245131  1.760901  1.543623  0.183195  0.000000  1.320001  1.972475
  1.766234  1.810925  1.734993
MBP1_CRYNE  2.665819  2.531040  2.827827  3.451189  1.921376  2.041502
  1.791822  1.882590  1.598177  1.506196  1.320001  0.000000  1.606068
  1.876348  1.696345  1.378680
MBP1_GIBZE  1.676493  1.531216  1.791314  2.487955  1.853606  2.818372
  1.892723  1.829431  1.516216  2.082772  1.972475  1.606068  0.000000
  0.497095  0.523613  1.052197
MBP1_NEUCR  1.594736  1.410911  2.121850  2.758670  2.028292  2.349724
  1.798693  1.798599  1.508336  1.858936  1.766234  1.876348  0.497095
  0.000000  0.488870  1.020647
MBP1_MAGGR  1.572812  1.432764  1.882121  2.041124  1.834001  1.893817
  1.546586  1.652280  1.687661  1.901732  1.810925  1.696345  0.523613
  0.488870  0.000000  1.108262
MBP1_ASPFU  1.998416  2.300807  2.853653  2.617325  2.184056  3.091846
  2.470074  2.232678  1.953468  2.043755  1.734993  1.378680  1.052197
  1.020647  1.108262  0.000000


PHYLIP input data: Mbp1 APSES domains

16  84
MBP1_SACCESIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDG
MBP1_CANGLSIMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEKFDVYQDLKPLFDFSEENG
MBP1_EREGOSIMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQKFEVLEELRPLFDFTRRDG
MBP1_KLULASIMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEKFEVLDELKPLFDFTQQEG
MBP1_CANALPIMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARNFGVYDVLKPIFEFQYIEG
MBP1_DEBHAPIMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKNFGVFDSLRPIFEFTYVEG
MBP1_YARLIAVMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATLYDVDSHLAPIFNYDDEDG
MBP1_SCHPOSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEG
MBP1_USTMAAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPS--
MBP1_ASPNISVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVA--G
MBP1_ASPTESVMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAERNNIIDKLRPIFDYVA--G
MBP1_CRYNESVMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQYGVGSYLSSVFDFVPSAS
MBP1_GIBZEAVMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQYGVEELLRPLLTYDMGQD
MBP1_NEUCRAVMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQYGVEELLSKLLTHNRGQE
MBP1_MAGGRAVMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQYGVEELLRPLLEYNRNPD
MBP1_ASPFUAVMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCREYHVEELLRPLLEYDMGPN

PHYLIP distance matrix: Mbp1 APSES domains

   16
MBP1_SACCE  0.000000  0.170047  0.205399  0.247219  0.487569  0.524603
  0.579198  0.798266  0.690172  0.527376  0.544473  0.657178  0.895524
  0.862050  0.905898  0.907783
MBP1_CANGL  0.170047  0.000000  0.279198  0.319549  0.559059  0.573474
  0.519177  0.789154  0.733572  0.615596  0.625874  0.665870  0.899041
  0.880370  0.935112  0.883959
MBP1_EREGO  0.205399  0.279198  0.000000  0.182532  0.544175  0.510304
  0.585979  0.846715  0.738784  0.557436  0.539410  0.674472  0.880525
  0.873348  0.850046  0.864623
MBP1_KLULA  0.247219  0.319549  0.182532  0.000000  0.467085  0.453277
  0.638363  0.813078  0.772358  0.567769  0.575968  0.690719  0.852917
  0.882337  0.830886  0.904034
MBP1_CANAL  0.487569  0.559059  0.544175  0.467085  0.000000  0.120290
  0.589271  0.686670  0.799405  0.647996  0.639552  0.681593  0.746085
  0.792284  0.817362  0.869237
MBP1_DEBHA  0.524603  0.573474  0.510304  0.453277  0.120290  0.000000
  0.555420  0.667709  0.800353  0.592738  0.583278  0.641173  0.744716
  0.811525  0.809515  0.839041
MBP1_YARLI  0.579198  0.519177  0.585979  0.638363  0.589271  0.555420
  0.000000  0.473875  0.462053  0.388599  0.421408  0.503568  0.581799
  0.593335  0.676734  0.691392
MBP1_SCHPO  0.798266  0.789154  0.846715  0.813078  0.686670  0.667709
  0.473875  0.000000  0.532761  0.545135  0.573415  0.643554  0.593169
  0.603559  0.762385  0.624657
MBP1_USTMA  0.690172  0.733572  0.738784  0.772358  0.799405  0.800353
  0.462053  0.532761  0.000000  0.346127  0.383120  0.560953  0.597524
  0.682290  0.675589  0.672514
MBP1_ASPNI  0.527376  0.615596  0.557436  0.567769  0.647996  0.592738
  0.388599  0.545135  0.346127  0.000000  0.064477  0.503545  0.673114
  0.778854  0.845557  0.762898
MBP1_ASPTE  0.544473  0.625874  0.539410  0.575968  0.639552  0.583278
  0.421408  0.573415  0.383120  0.064477  0.000000  0.534114  0.699665
  0.812899  0.847328  0.802412
MBP1_CRYNE  0.657178  0.665870  0.674472  0.690719  0.681593  0.641173
  0.503568  0.643554  0.560953  0.503545  0.534114  0.000000  0.650085
  0.653523  0.713330  0.695510
MBP1_GIBZE  0.895524  0.899041  0.880525  0.852917  0.746085  0.744716
  0.581799  0.593169  0.597524  0.673114  0.699665  0.650085  0.000000
  0.227631  0.185991  0.289073
MBP1_NEUCR  0.862050  0.880370  0.873348  0.882337  0.792284  0.811525
  0.593335  0.603559  0.682290  0.778854  0.812899  0.653523  0.227631
  0.000000  0.330632  0.480412
MBP1_MAGGR  0.905898  0.935112  0.850046  0.830886  0.817362  0.809515
  0.676734  0.762385  0.675589  0.845557  0.847328  0.713330  0.185991
  0.330632  0.000000  0.316199
MBP1_ASPFU  0.907783  0.883959  0.864623  0.904034  0.869237  0.839041
  0.691392  0.624657  0.672514  0.762898  0.802412  0.695510  0.289073
  0.480412  0.316199  0.000000

[end]

Retrieved from "http://steipe.biochemistry.utoronto.ca/abc/index.php?title=Homology_modeling_fallback_data&oldid=2630"