Difference between revisions of "Homology modeling fallback data"
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Line 2: | Line 2: | ||
16 55 | 16 55 | ||
− | MBP1_SACCERDFIHSTGNFAKAKTQRLHTATNSQTPLMLLHETVFGDVVFFSLQKTNKLSSLVK | + | MBP1_SACCERDFIHSTGNFAKAKTQRLHTATNSQTPLMLLHETVFGDVVFFSLQKTNKLSSLVK |
MBP1_CANGLKDFIHPTGNFAKAKMQRLHTAANANTPLMLLSETVFNDREFFSLQKTRKISELIS | MBP1_CANGLKDFIHPTGNFAKAKMQRLHTAANANTPLMLLSETVFNDREFFSLQKTRKISELIS | ||
MBP1_EREGOKEFLHPTGKFAKAKTGQHHTALNQATPLMLLQDTVFRDKKFFSTEKMHKINRLIE | MBP1_EREGOKEFLHPTGKFAKAKTGQHHTALNQATPLMLLQDTVFRDKKFFSTEKMHKINRLIE |
Revision as of 10:14, 5 December 2006
Contents
PHYLIP input data: Mbp1 orthologues
16 55 MBP1_SACCERDFIHSTGNFAKAKTQRLHTATNSQTPLMLLHETVFGDVVFFSLQKTNKLSSLVK MBP1_CANGLKDFIHPTGNFAKAKMQRLHTAANANTPLMLLSETVFNDREFFSLQKTRKISELIS MBP1_EREGOKEFLHPTGKFAKAKTGQHHTALNQATPLMLLQDTVFRDKKFFSTEKMHKINRLIE MBP1_KLULAKDFIHPTGKFPKAKTQRHHTALNNVTPLIILKDTVFKDDQFYDLVKMRKLNQIID MBP1_CANALTPFVTSEGKFPKAKIQRGNTIRNNNTPLMLLKESVLLNKKCIQMERTKLVDEISK MBP1_DEBHATPFVTLEGKFPKAKVQHGNTIKNNRTPLMLLFDSILLNKKCITYFKVENKENIKE MBP1_YARLITPFQCKNVGFDKPQVQSGHTATNMFTPLTILQDTLFGAKKVSMYFKLDLVDDVVE MBP1_SCHPOVECFIKGVDFDKPQASSGHTSCNRLTPLMLLQSTIYGAMDCVQVRQMKDTLYIRK MBP1_USTMATPCIINNVGLDKPQIETEHTAVNSNTALMSFTDPSLRSKRLVRANRLELVDKFVA MBP1_ASPNITPFKIGTDGFDKPAVSAGNTALSIHTPLVLLLDTISGVFRLVQAHGLAAVKELAQ MBP1_ASPTETPFKIEGDGFDKPAVSAGNTALSVHTPLVLLLDTVSGAFRLVSSYGAAAVKELAQ MBP1_CRYNEVPAMIRGIGVHKSAISMGHSAGNYATPLILLSPSIRGNKGLVVSYGSEVLEDKIR MBP1_GIBZESDMEVNNIGVDKGKESRSHTAVNGSTALMVLGGTIEGNRSIIATEASKMVSALKG MBP1_NEUCRTGMEVNNVNIDKGRENRSHTAVNACTALMLLGCTLDGNRSIITLHSTQAVAALQA MBP1_MAGGRVEFEVNGVGVEKGKEQRCHTAVNTSTPLMILGNTMEGNRSIITLHSQQSVVALKG MBP1_ASPFUVSMEVNGVGVVKARERKRNNALNGATALQVLAPTIDRSV-LVSLHATEILAEVDR
PHYLIP distance matrix: Mbp1 orthologues
16 MBP1_SACCE 0.000000 0.340197 0.641436 0.698015 1.217853 1.575914 1.679015 1.734556 2.205033 2.021848 2.012439 2.665819 1.676493 1.594736 1.572812 1.998416 MBP1_CANGL 0.340197 0.000000 0.573520 0.606792 1.101098 1.571271 1.788034 2.092392 1.858878 2.098264 2.010324 2.531040 1.531216 1.410911 1.432764 2.300807 MBP1_EREGO 0.641436 0.573520 0.000000 0.537044 1.273771 1.429173 1.510184 1.805609 1.780957 1.919228 1.961973 2.827827 1.791314 2.121850 1.882121 2.853653 MBP1_KLULA 0.698015 0.606792 0.537044 0.000000 1.191955 1.453182 1.674717 2.266314 2.264786 2.478006 2.696935 3.451189 2.487955 2.758670 2.041124 2.617325 MBP1_CANAL 1.217853 1.101098 1.273771 1.191955 0.000000 0.540067 1.525822 1.826937 1.371732 1.702409 1.765129 1.921376 1.853606 2.028292 1.834001 2.184056 MBP1_DEBHA 1.575914 1.571271 1.429173 1.453182 0.540067 0.000000 1.366472 2.111250 1.907877 2.038152 1.842951 2.041502 2.818372 2.349724 1.893817 3.091846 MBP1_YARLI 1.679015 1.788034 1.510184 1.674717 1.525822 1.366472 0.000000 1.458949 1.099978 1.258665 1.245131 1.791822 1.892723 1.798693 1.546586 2.470074 MBP1_SCHPO 1.734556 2.092392 1.805609 2.266314 1.826937 2.111250 1.458949 0.000000 1.965611 1.650181 1.760901 1.882590 1.829431 1.798599 1.652280 2.232678 MBP1_USTMA 2.205033 1.858878 1.780957 2.264786 1.371732 1.907877 1.099978 1.965611 0.000000 1.361737 1.543623 1.598177 1.516216 1.508336 1.687661 1.953468 MBP1_ASPNI 2.021848 2.098264 1.919228 2.478006 1.702409 2.038152 1.258665 1.650181 1.361737 0.000000 0.183195 1.506196 2.082772 1.858936 1.901732 2.043755 MBP1_ASPTE 2.012439 2.010324 1.961973 2.696935 1.765129 1.842951 1.245131 1.760901 1.543623 0.183195 0.000000 1.320001 1.972475 1.766234 1.810925 1.734993 MBP1_CRYNE 2.665819 2.531040 2.827827 3.451189 1.921376 2.041502 1.791822 1.882590 1.598177 1.506196 1.320001 0.000000 1.606068 1.876348 1.696345 1.378680 MBP1_GIBZE 1.676493 1.531216 1.791314 2.487955 1.853606 2.818372 1.892723 1.829431 1.516216 2.082772 1.972475 1.606068 0.000000 0.497095 0.523613 1.052197 MBP1_NEUCR 1.594736 1.410911 2.121850 2.758670 2.028292 2.349724 1.798693 1.798599 1.508336 1.858936 1.766234 1.876348 0.497095 0.000000 0.488870 1.020647 MBP1_MAGGR 1.572812 1.432764 1.882121 2.041124 1.834001 1.893817 1.546586 1.652280 1.687661 1.901732 1.810925 1.696345 0.523613 0.488870 0.000000 1.108262 MBP1_ASPFU 1.998416 2.300807 2.853653 2.617325 2.184056 3.091846 2.470074 2.232678 1.953468 2.043755 1.734993 1.378680 1.052197 1.020647 1.108262 0.000000
PHYLIP input data: Mbp1 APSES domains
16 84 MBP1_SACCESIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDG MBP1_CANGLSIMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEKFDVYQDLKPLFDFSEENG MBP1_EREGOSIMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQKFEVLEELRPLFDFTRRDG MBP1_KLULASIMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEKFEVLDELKPLFDFTQQEG MBP1_CANALPIMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARNFGVYDVLKPIFEFQYIEG MBP1_DEBHAPIMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKNFGVFDSLRPIFEFTYVEG MBP1_YARLIAVMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATLYDVDSHLAPIFNYDDEDG MBP1_SCHPOSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEG MBP1_USTMAAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPS-- MBP1_ASPNISVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVA--G MBP1_ASPTESVMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAERNNIIDKLRPIFDYVA--G MBP1_CRYNESVMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQYGVGSYLSSVFDFVPSAS MBP1_GIBZEAVMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQYGVEELLRPLLTYDMGQD MBP1_NEUCRAVMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQYGVEELLSKLLTHNRGQE MBP1_MAGGRAVMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQYGVEELLRPLLEYNRNPD MBP1_ASPFUAVMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCREYHVEELLRPLLEYDMGPN
PHYLIP distance matrix: Mbp1 APSES domains
16 MBP1_SACCE 0.000000 0.170047 0.205399 0.247219 0.487569 0.524603 0.579198 0.798266 0.690172 0.527376 0.544473 0.657178 0.895524 0.862050 0.905898 0.907783 MBP1_CANGL 0.170047 0.000000 0.279198 0.319549 0.559059 0.573474 0.519177 0.789154 0.733572 0.615596 0.625874 0.665870 0.899041 0.880370 0.935112 0.883959 MBP1_EREGO 0.205399 0.279198 0.000000 0.182532 0.544175 0.510304 0.585979 0.846715 0.738784 0.557436 0.539410 0.674472 0.880525 0.873348 0.850046 0.864623 MBP1_KLULA 0.247219 0.319549 0.182532 0.000000 0.467085 0.453277 0.638363 0.813078 0.772358 0.567769 0.575968 0.690719 0.852917 0.882337 0.830886 0.904034 MBP1_CANAL 0.487569 0.559059 0.544175 0.467085 0.000000 0.120290 0.589271 0.686670 0.799405 0.647996 0.639552 0.681593 0.746085 0.792284 0.817362 0.869237 MBP1_DEBHA 0.524603 0.573474 0.510304 0.453277 0.120290 0.000000 0.555420 0.667709 0.800353 0.592738 0.583278 0.641173 0.744716 0.811525 0.809515 0.839041 MBP1_YARLI 0.579198 0.519177 0.585979 0.638363 0.589271 0.555420 0.000000 0.473875 0.462053 0.388599 0.421408 0.503568 0.581799 0.593335 0.676734 0.691392 MBP1_SCHPO 0.798266 0.789154 0.846715 0.813078 0.686670 0.667709 0.473875 0.000000 0.532761 0.545135 0.573415 0.643554 0.593169 0.603559 0.762385 0.624657 MBP1_USTMA 0.690172 0.733572 0.738784 0.772358 0.799405 0.800353 0.462053 0.532761 0.000000 0.346127 0.383120 0.560953 0.597524 0.682290 0.675589 0.672514 MBP1_ASPNI 0.527376 0.615596 0.557436 0.567769 0.647996 0.592738 0.388599 0.545135 0.346127 0.000000 0.064477 0.503545 0.673114 0.778854 0.845557 0.762898 MBP1_ASPTE 0.544473 0.625874 0.539410 0.575968 0.639552 0.583278 0.421408 0.573415 0.383120 0.064477 0.000000 0.534114 0.699665 0.812899 0.847328 0.802412 MBP1_CRYNE 0.657178 0.665870 0.674472 0.690719 0.681593 0.641173 0.503568 0.643554 0.560953 0.503545 0.534114 0.000000 0.650085 0.653523 0.713330 0.695510 MBP1_GIBZE 0.895524 0.899041 0.880525 0.852917 0.746085 0.744716 0.581799 0.593169 0.597524 0.673114 0.699665 0.650085 0.000000 0.227631 0.185991 0.289073 MBP1_NEUCR 0.862050 0.880370 0.873348 0.882337 0.792284 0.811525 0.593335 0.603559 0.682290 0.778854 0.812899 0.653523 0.227631 0.000000 0.330632 0.480412 MBP1_MAGGR 0.905898 0.935112 0.850046 0.830886 0.817362 0.809515 0.676734 0.762385 0.675589 0.845557 0.847328 0.713330 0.185991 0.330632 0.000000 0.316199 MBP1_ASPFU 0.907783 0.883959 0.864623 0.904034 0.869237 0.839041 0.691392 0.624657 0.672514 0.762898 0.802412 0.695510 0.289073 0.480412 0.316199 0.000000
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