Difference between revisions of "Homology modeling fallback data"

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Line 70: Line 70:
 
   2.470074  2.232678  1.953468  2.043755  1.734993  1.378680  1.052197
 
   2.470074  2.232678  1.953468  2.043755  1.734993  1.378680  1.052197
 
   1.020647  1.108262  0.000000
 
   1.020647  1.108262  0.000000
 +
 +
 +
==PHYLIP input data: Mbp1 APSES domains==
 +
 +
16  84
 +
MBP1_SACCESIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDG
 +
MBP1_CANGLSIMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEKFDVYQDLKPLFDFSEENG
 +
MBP1_EREGOSIMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQKFEVLEELRPLFDFTRRDG
 +
MBP1_KLULASIMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEKFEVLDELKPLFDFTQQEG
 +
MBP1_CANALPIMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARNFGVYDVLKPIFEFQYIEG
 +
MBP1_DEBHAPIMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKNFGVFDSLRPIFEFTYVEG
 +
MBP1_YARLIAVMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATLYDVDSHLAPIFNYDDEDG
 +
MBP1_SCHPOSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEG
 +
MBP1_USTMAAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPS--
 +
MBP1_ASPNISVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVA--G
 +
MBP1_ASPTESVMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAERNNIIDKLRPIFDYVA--G
 +
MBP1_CRYNESVMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQYGVGSYLSSVFDFVPSAS
 +
MBP1_GIBZEAVMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQYGVEELLRPLLTYDMGQD
 +
MBP1_NEUCRAVMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQYGVEELLSKLLTHNRGQE
 +
MBP1_MAGGRAVMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQYGVEELLRPLLEYNRNPD
 +
MBP1_ASPFUAVMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCREYHVEELLRPLLEYDMGPN
 +
 +
==PHYLIP distance matrix: Mbp1 APSES domains==
 +
 +
    16
 +
MBP1_SACCE  0.000000  0.170047  0.205399  0.247219  0.487569  0.524603
 +
  0.579198  0.798266  0.690172  0.527376  0.544473  0.657178  0.895524
 +
  0.862050  0.905898  0.907783
 +
MBP1_CANGL  0.170047  0.000000  0.279198  0.319549  0.559059  0.573474
 +
  0.519177  0.789154  0.733572  0.615596  0.625874  0.665870  0.899041
 +
  0.880370  0.935112  0.883959
 +
MBP1_EREGO  0.205399  0.279198  0.000000  0.182532  0.544175  0.510304
 +
  0.585979  0.846715  0.738784  0.557436  0.539410  0.674472  0.880525
 +
  0.873348  0.850046  0.864623
 +
MBP1_KLULA  0.247219  0.319549  0.182532  0.000000  0.467085  0.453277
 +
  0.638363  0.813078  0.772358  0.567769  0.575968  0.690719  0.852917
 +
  0.882337  0.830886  0.904034
 +
MBP1_CANAL  0.487569  0.559059  0.544175  0.467085  0.000000  0.120290
 +
  0.589271  0.686670  0.799405  0.647996  0.639552  0.681593  0.746085
 +
  0.792284  0.817362  0.869237
 +
MBP1_DEBHA  0.524603  0.573474  0.510304  0.453277  0.120290  0.000000
 +
  0.555420  0.667709  0.800353  0.592738  0.583278  0.641173  0.744716
 +
  0.811525  0.809515  0.839041
 +
MBP1_YARLI  0.579198  0.519177  0.585979  0.638363  0.589271  0.555420
 +
  0.000000  0.473875  0.462053  0.388599  0.421408  0.503568  0.581799
 +
  0.593335  0.676734  0.691392
 +
MBP1_SCHPO  0.798266  0.789154  0.846715  0.813078  0.686670  0.667709
 +
  0.473875  0.000000  0.532761  0.545135  0.573415  0.643554  0.593169
 +
  0.603559  0.762385  0.624657
 +
MBP1_USTMA  0.690172  0.733572  0.738784  0.772358  0.799405  0.800353
 +
  0.462053  0.532761  0.000000  0.346127  0.383120  0.560953  0.597524
 +
  0.682290  0.675589  0.672514
 +
MBP1_ASPNI  0.527376  0.615596  0.557436  0.567769  0.647996  0.592738
 +
  0.388599  0.545135  0.346127  0.000000  0.064477  0.503545  0.673114
 +
  0.778854  0.845557  0.762898
 +
MBP1_ASPTE  0.544473  0.625874  0.539410  0.575968  0.639552  0.583278
 +
  0.421408  0.573415  0.383120  0.064477  0.000000  0.534114  0.699665
 +
  0.812899  0.847328  0.802412
 +
MBP1_CRYNE  0.657178  0.665870  0.674472  0.690719  0.681593  0.641173
 +
  0.503568  0.643554  0.560953  0.503545  0.534114  0.000000  0.650085
 +
  0.653523  0.713330  0.695510
 +
MBP1_GIBZE  0.895524  0.899041  0.880525  0.852917  0.746085  0.744716
 +
  0.581799  0.593169  0.597524  0.673114  0.699665  0.650085  0.000000
 +
  0.227631  0.185991  0.289073
 +
MBP1_NEUCR  0.862050  0.880370  0.873348  0.882337  0.792284  0.811525
 +
  0.593335  0.603559  0.682290  0.778854  0.812899  0.653523  0.227631
 +
  0.000000  0.330632  0.480412
 +
MBP1_MAGGR  0.905898  0.935112  0.850046  0.830886  0.817362  0.809515
 +
  0.676734  0.762385  0.675589  0.845557  0.847328  0.713330  0.185991
 +
  0.330632  0.000000  0.316199
 +
MBP1_ASPFU  0.907783  0.883959  0.864623  0.904034  0.869237  0.839041
 +
  0.691392  0.624657  0.672514  0.762898  0.802412  0.695510  0.289073
 +
  0.480412  0.316199  0.000000
 +
 +
[end]

Revision as of 10:06, 5 December 2006

PHYLIP input data: Mbp1 orthologues

16  55 
MBP1_SACCERDFIHSTGNFAKAKTQRLHTATNSQTPLMLLHETVFGDVVFFSLQKTNKLSSLVK 
MBP1_CANGLKDFIHPTGNFAKAKMQRLHTAANANTPLMLLSETVFNDREFFSLQKTRKISELIS
MBP1_EREGOKEFLHPTGKFAKAKTGQHHTALNQATPLMLLQDTVFRDKKFFSTEKMHKINRLIE
MBP1_KLULAKDFIHPTGKFPKAKTQRHHTALNNVTPLIILKDTVFKDDQFYDLVKMRKLNQIID
MBP1_CANALTPFVTSEGKFPKAKIQRGNTIRNNNTPLMLLKESVLLNKKCIQMERTKLVDEISK
MBP1_DEBHATPFVTLEGKFPKAKVQHGNTIKNNRTPLMLLFDSILLNKKCITYFKVENKENIKE
MBP1_YARLITPFQCKNVGFDKPQVQSGHTATNMFTPLTILQDTLFGAKKVSMYFKLDLVDDVVE
MBP1_SCHPOVECFIKGVDFDKPQASSGHTSCNRLTPLMLLQSTIYGAMDCVQVRQMKDTLYIRK
MBP1_USTMATPCIINNVGLDKPQIETEHTAVNSNTALMSFTDPSLRSKRLVRANRLELVDKFVA
MBP1_ASPNITPFKIGTDGFDKPAVSAGNTALSIHTPLVLLLDTISGVFRLVQAHGLAAVKELAQ
MBP1_ASPTETPFKIEGDGFDKPAVSAGNTALSVHTPLVLLLDTVSGAFRLVSSYGAAAVKELAQ
MBP1_CRYNEVPAMIRGIGVHKSAISMGHSAGNYATPLILLSPSIRGNKGLVVSYGSEVLEDKIR
MBP1_GIBZESDMEVNNIGVDKGKESRSHTAVNGSTALMVLGGTIEGNRSIIATEASKMVSALKG
MBP1_NEUCRTGMEVNNVNIDKGRENRSHTAVNACTALMLLGCTLDGNRSIITLHSTQAVAALQA
MBP1_MAGGRVEFEVNGVGVEKGKEQRCHTAVNTSTPLMILGNTMEGNRSIITLHSQQSVVALKG
MBP1_ASPFUVSMEVNGVGVVKARERKRNNALNGATALQVLAPTIDRSV-LVSLHATEILAEVDR

PHYLIP distance matrix: Mbp1 orthologues

   16
MBP1_SACCE  0.000000  0.340197  0.641436  0.698015  1.217853  1.575914
  1.679015  1.734556  2.205033  2.021848  2.012439  2.665819  1.676493
  1.594736  1.572812  1.998416
MBP1_CANGL  0.340197  0.000000  0.573520  0.606792  1.101098  1.571271
  1.788034  2.092392  1.858878  2.098264  2.010324  2.531040  1.531216
  1.410911  1.432764  2.300807
MBP1_EREGO  0.641436  0.573520  0.000000  0.537044  1.273771  1.429173
  1.510184  1.805609  1.780957  1.919228  1.961973  2.827827  1.791314
  2.121850  1.882121  2.853653
MBP1_KLULA  0.698015  0.606792  0.537044  0.000000  1.191955  1.453182
  1.674717  2.266314  2.264786  2.478006  2.696935  3.451189  2.487955
  2.758670  2.041124  2.617325
MBP1_CANAL  1.217853  1.101098  1.273771  1.191955  0.000000  0.540067
  1.525822  1.826937  1.371732  1.702409  1.765129  1.921376  1.853606
  2.028292  1.834001  2.184056
MBP1_DEBHA  1.575914  1.571271  1.429173  1.453182  0.540067  0.000000
  1.366472  2.111250  1.907877  2.038152  1.842951  2.041502  2.818372
  2.349724  1.893817  3.091846
MBP1_YARLI  1.679015  1.788034  1.510184  1.674717  1.525822  1.366472
  0.000000  1.458949  1.099978  1.258665  1.245131  1.791822  1.892723
  1.798693  1.546586  2.470074
MBP1_SCHPO  1.734556  2.092392  1.805609  2.266314  1.826937  2.111250
  1.458949  0.000000  1.965611  1.650181  1.760901  1.882590  1.829431
  1.798599  1.652280  2.232678
MBP1_USTMA  2.205033  1.858878  1.780957  2.264786  1.371732  1.907877
  1.099978  1.965611  0.000000  1.361737  1.543623  1.598177  1.516216
  1.508336  1.687661  1.953468
MBP1_ASPNI  2.021848  2.098264  1.919228  2.478006  1.702409  2.038152
  1.258665  1.650181  1.361737  0.000000  0.183195  1.506196  2.082772
  1.858936  1.901732  2.043755
MBP1_ASPTE  2.012439  2.010324  1.961973  2.696935  1.765129  1.842951
  1.245131  1.760901  1.543623  0.183195  0.000000  1.320001  1.972475
  1.766234  1.810925  1.734993
MBP1_CRYNE  2.665819  2.531040  2.827827  3.451189  1.921376  2.041502
  1.791822  1.882590  1.598177  1.506196  1.320001  0.000000  1.606068
  1.876348  1.696345  1.378680
MBP1_GIBZE  1.676493  1.531216  1.791314  2.487955  1.853606  2.818372
  1.892723  1.829431  1.516216  2.082772  1.972475  1.606068  0.000000
  0.497095  0.523613  1.052197
MBP1_NEUCR  1.594736  1.410911  2.121850  2.758670  2.028292  2.349724
  1.798693  1.798599  1.508336  1.858936  1.766234  1.876348  0.497095
  0.000000  0.488870  1.020647
MBP1_MAGGR  1.572812  1.432764  1.882121  2.041124  1.834001  1.893817
  1.546586  1.652280  1.687661  1.901732  1.810925  1.696345  0.523613
  0.488870  0.000000  1.108262
MBP1_ASPFU  1.998416  2.300807  2.853653  2.617325  2.184056  3.091846
  2.470074  2.232678  1.953468  2.043755  1.734993  1.378680  1.052197
  1.020647  1.108262  0.000000


PHYLIP input data: Mbp1 APSES domains

16  84
MBP1_SACCESIMKRKKDDWVNATHILKAANFAKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEKFSVYDQLKPLFDFTQTDG
MBP1_CANGLSIMKRKNDGWVNATHILKAANFAKAKRTRILEKEVLKEMHEKVQGGFGKYQGTWVPLNIAINLAEKFDVYQDLKPLFDFSEENG
MBP1_EREGOSIMKRKADDWVNATHILKAAKFAKAKRTRILEKEVIKDTHEKVQGGFGKYQGTWVPLDIARRLAQKFEVLEELRPLFDFTRRDG
MBP1_KLULASIMKRKADNWVNATHILKAAKFPKAKRTRILEKEVITDTHEKVQGGFGKYQGTWIPLELASKLAEKFEVLDELKPLFDFTQQEG
MBP1_CANALPIMRRKKDSWINATHILKIAKFPKAKRTRILEKDVQTGIHEKVQGGYGKYQGTYVPLDLGAAIARNFGVYDVLKPIFEFQYIEG
MBP1_DEBHAPIMRRKLDSWINATHILKIAKFPKAKRTRILEKDVQTGVHEKVQGGYGKYQGTYVPLDLGADIAKNFGVFDSLRPIFEFTYVEG
MBP1_YARLIAVMRRKSDGWVNATHILKVAGFDKPQRTRILEKEVQKGVHEKVQGGYGKYQGTWVPLERAREIATLYDVDSHLAPIFNYDDEDG
MBP1_SCHPOSVMRRRRDSWLNATQILKVADFDKPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEG
MBP1_USTMAAVMRRRSDDWLNATQILKVVGLDKPQRTRVLEREIQKGIHEKVQGGYGKYQGTWIPLDVAIELAERYNIQGLLQPITSYVPS--
MBP1_ASPNISVMRRRSDDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLQEGRQLAERNNILDKLLPIFDYVA--G
MBP1_ASPTESVMRRRADDWINATHILKVAGFDKPARTRILEREVQKGVHEKVQGGYGKYQGTWIPLPEGRLLAERNNIIDKLRPIFDYVA--G
MBP1_CRYNESVMRRASDSWVNATQILKVAGVHKSARTKILEKEVLNGIHEKIQGGYGKYQGTWVPLDRGRDLAEQYGVGSYLSSVFDFVPSAS
MBP1_GIBZEAVMRRRNDSWLNATQILKVAGVDKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKFERGLQVCRQYGVEELLRPLLTYDMGQD
MBP1_NEUCRAVMRRQKDGWVNATQILKVANIDKGRRTKILEKEIQIGEHEKVQGGYGKYQGTWIPFERGLEVCRQYGVEELLSKLLTHNRGQE
MBP1_MAGGRAVMKRIGDSKLNATQILKVAGVEKGKRTKILEKEIQTGEHEKVQGGYGKYQGTWIKYERALEVCRQYGVEELLRPLLEYNRNPD
MBP1_ASPFUAVMKRRSDSWLNATQILKVAGVVKARRTKTLEKEIAAGEHEKVQGGYGKYQGTWVNYQRGVELCREYHVEELLRPLLEYDMGPN

PHYLIP distance matrix: Mbp1 APSES domains

   16
MBP1_SACCE  0.000000  0.170047  0.205399  0.247219  0.487569  0.524603
  0.579198  0.798266  0.690172  0.527376  0.544473  0.657178  0.895524
  0.862050  0.905898  0.907783
MBP1_CANGL  0.170047  0.000000  0.279198  0.319549  0.559059  0.573474
  0.519177  0.789154  0.733572  0.615596  0.625874  0.665870  0.899041
  0.880370  0.935112  0.883959
MBP1_EREGO  0.205399  0.279198  0.000000  0.182532  0.544175  0.510304
  0.585979  0.846715  0.738784  0.557436  0.539410  0.674472  0.880525
  0.873348  0.850046  0.864623
MBP1_KLULA  0.247219  0.319549  0.182532  0.000000  0.467085  0.453277
  0.638363  0.813078  0.772358  0.567769  0.575968  0.690719  0.852917
  0.882337  0.830886  0.904034
MBP1_CANAL  0.487569  0.559059  0.544175  0.467085  0.000000  0.120290
  0.589271  0.686670  0.799405  0.647996  0.639552  0.681593  0.746085
  0.792284  0.817362  0.869237
MBP1_DEBHA  0.524603  0.573474  0.510304  0.453277  0.120290  0.000000
  0.555420  0.667709  0.800353  0.592738  0.583278  0.641173  0.744716
  0.811525  0.809515  0.839041
MBP1_YARLI  0.579198  0.519177  0.585979  0.638363  0.589271  0.555420
  0.000000  0.473875  0.462053  0.388599  0.421408  0.503568  0.581799
  0.593335  0.676734  0.691392
MBP1_SCHPO  0.798266  0.789154  0.846715  0.813078  0.686670  0.667709
  0.473875  0.000000  0.532761  0.545135  0.573415  0.643554  0.593169
  0.603559  0.762385  0.624657
MBP1_USTMA  0.690172  0.733572  0.738784  0.772358  0.799405  0.800353
  0.462053  0.532761  0.000000  0.346127  0.383120  0.560953  0.597524
  0.682290  0.675589  0.672514
MBP1_ASPNI  0.527376  0.615596  0.557436  0.567769  0.647996  0.592738
  0.388599  0.545135  0.346127  0.000000  0.064477  0.503545  0.673114
  0.778854  0.845557  0.762898
MBP1_ASPTE  0.544473  0.625874  0.539410  0.575968  0.639552  0.583278
  0.421408  0.573415  0.383120  0.064477  0.000000  0.534114  0.699665
  0.812899  0.847328  0.802412
MBP1_CRYNE  0.657178  0.665870  0.674472  0.690719  0.681593  0.641173
  0.503568  0.643554  0.560953  0.503545  0.534114  0.000000  0.650085
  0.653523  0.713330  0.695510
MBP1_GIBZE  0.895524  0.899041  0.880525  0.852917  0.746085  0.744716
  0.581799  0.593169  0.597524  0.673114  0.699665  0.650085  0.000000
  0.227631  0.185991  0.289073
MBP1_NEUCR  0.862050  0.880370  0.873348  0.882337  0.792284  0.811525
  0.593335  0.603559  0.682290  0.778854  0.812899  0.653523  0.227631
  0.000000  0.330632  0.480412
MBP1_MAGGR  0.905898  0.935112  0.850046  0.830886  0.817362  0.809515
  0.676734  0.762385  0.675589  0.845557  0.847328  0.713330  0.185991
  0.330632  0.000000  0.316199
MBP1_ASPFU  0.907783  0.883959  0.864623  0.904034  0.869237  0.839041
  0.691392  0.624657  0.672514  0.762898  0.802412  0.695510  0.289073
  0.480412  0.316199  0.000000

[end]

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