Difference between revisions of "ABC-INT-Phylogeny"
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*Use an Mbp1 orthologue (RBM) | *Use an Mbp1 orthologue (RBM) | ||
| − | *Find all orthologues and paralogues in | + | *Find all orthologues and paralogues in MYSPE and reference species |
*Collect, rename, align | *Collect, rename, align | ||
*Prepare for phylogenetic analysis | *Prepare for phylogenetic analysis | ||
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You need to complete the following units before beginning this one: | You need to complete the following units before beginning this one: | ||
| − | *[[BIN-PHYLO-Selective_pressure]] | + | *[[BIN-PHYLO-Selective_pressure|BIN-PHYLO-Selective_pressure (Detecting Purifying Selection Through Phylogenetic Analysis)]] |
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Revision as of 02:52, 4 October 2017
Integration Unit: Phylogeny
Keywords: Integration unit: calculate and analyse a phylogenetic tree
Contents
This page is only a stub; it is here as a placeholder to establish the logical framework of the site but there is no significant content as yet. Do not work with this material until it is updated to "live" status.
Abstract
This page assesses the learning units for working with multiple sequence alignments and structure data.
- Use an Mbp1 orthologue (RBM)
- Find all orthologues and paralogues in MYSPE and reference species
- Collect, rename, align
- Prepare for phylogenetic analysis
- Calculate tree
- Analyze informativeness
- Prepare reference tree from 28srRNA (also see https://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-11-152 and https://academic.oup.com/sysbio/article/61/5/835/1736260/Phylogenetic-Signal-and-Noise-Predicting-the-Power)
- Interpret
This unit ...
Prerequisites
You need to complete the following units before beginning this one:
Objectives
...
Outcomes
...
Deliverables
- No separate deliverables: This unit collects other units and has no deliverables on its own.
Evaluation
Evaluation: Integrated Unit
- This unit should be submitted for evaluation for a maximum of 10 marks. Details TBD.
Contents
This is a "milestone unit". Its purpose is merely to collect a number of preparatory units into a single, common prerequisite. It has no contents of its own; you are expected to be familiar and competent with all preparatory material at this point.
Further reading, links and resources
Notes
Self-evaluation
If in doubt, ask! If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
About ...
Author:
- Boris Steipe <boris.steipe@utoronto.ca>
Created:
- 2017-08-05
Modified:
- 2017-08-09
Version:
- 0.1
Version history:
- 0.1 First stub
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