Difference between revisions of "BCB420 Week02 Tasks"
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==For next week== | ==For next week== | ||
| − | *Work through | + | *Work through [[Software_Development|Software development page]] |
| − | *Work through ''' | + | *Work through [[R_knitr|'''R Studio''' literal programming with knitr]] |
| − | * | + | *Study databases and strategies |
| + | *Draft project workflows | ||
*Contribute to quiz questions | *Contribute to quiz questions | ||
*More ... TBD | *More ... TBD | ||
Revision as of 17:37, 21 January 2015
Week 2 Tasks
In Class
- Questions
- Quiz 1 and pickup
- Explore system definitions and system discovery processes in submitted papers.
- Discuss data relationships for functional annotation
- Coexpression
- Perturbation response (chemogenomics)
- Interaction - physical and genetic
- Similar genomic context
- Gene fusion/fission events
- Homology
- Structure
- Colocation
- Literature
- GO annotation
- KEGG, Biocyc - other regulatory and metabolic pathways
- First principles from systems theory (???)
- Define Project
- Objectives
- Scope
- Workflow
- Milestones for preparation phases I - III
- Work packages
- Discuss Development topics
- Habits (Projects, IDE and debugging, Version control)
- Collaboration (Wiki, Git, Etherpad)
- Development (TDD, Literate Development)
- Testing (Unit testing, Integration testing)
- R Package - Latex tutorial (TBD)
- github tutorial (TBD)
For next week
- Work through Software development page
- Work through R Studio literal programming with knitr
- Study databases and strategies
- Draft project workflows
- Contribute to quiz questions
- More ... TBD
