Difference between revisions of "BCB420 Week02 Tasks"
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| − | *Discuss | + | *Discuss Development topics |
| − | ** Collaboration | + | ** Habits (Projects, IDE and debugging, Version control) |
| − | ** Development | + | ** Collaboration (Wiki, Git, Etherpad) |
| − | ** Testing | + | ** Development (TDD, Literate Development) |
| − | + | ** Testing (Unit testing, Integration testing) | |
Revision as of 19:24, 14 January 2015
Week 2 Tasks
In Class
- Questions
- Quiz 1 and pickup
- Explore system definitions and system discovery processes in submitted papers.
- Discuss data relationships for functional annotation
- Coexpression
- Perturbation response (chemogenomics)
- Interaction - physical and genetic
- Similar genomic context
- Gene fusion/fission events
- Homology
- Structure
- Colocation
- Literature
- GO annotation
- KEGG, Biocyc - other regulatory and metabolic pathways
- First principles from systems theory (???)
- Define Project
- Objectives
- Scope
- Workflow
- Milestones for preparation phases I - III
- Work packages
- Discuss Development topics
- Habits (Projects, IDE and debugging, Version control)
- Collaboration (Wiki, Git, Etherpad)
- Development (TDD, Literate Development)
- Testing (Unit testing, Integration testing)
For next week
- Work through R Studio development tutorial (TBD)
- Work through github tutorial (TBD)
- Complete project plan
- Contribute to quiz questions
- More ... TBD
