Difference between revisions of "BCB420 Week02 Tasks"
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;Contents | ;Contents | ||
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| + | * Questions | ||
* Quiz 1 and pickup | * Quiz 1 and pickup | ||
| − | *Explore system definitions and system discovery processes in submitted papers. | + | ---- |
| − | *Discuss data relationships for functional annotation | + | |
| + | * Explore system definitions and system discovery processes in submitted papers. | ||
| + | * Discuss data relationships for functional annotation | ||
** Coexpression | ** Coexpression | ||
** Perturbation response (chemogenomics) | ** Perturbation response (chemogenomics) | ||
| Line 23: | Line 27: | ||
** First principles from systems theory (???) | ** First principles from systems theory (???) | ||
| − | *Define Class Project | + | ---- |
| + | |||
| + | * Define Class Project | ||
** Objectives | ** Objectives | ||
** Scope | ** Scope | ||
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** Milestones | ** Milestones | ||
** Work packages | ** Work packages | ||
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| + | ---- | ||
*Discuss | *Discuss | ||
Revision as of 19:06, 14 January 2015
Week 2 Tasks
- Contents
- Questions
- Quiz 1 and pickup
- Explore system definitions and system discovery processes in submitted papers.
- Discuss data relationships for functional annotation
- Coexpression
- Perturbation response (chemogenomics)
- Interaction - physical and genetic
- Similar genomic context
- Gene fusion/fission events
- Homology
- Structure
- Colocation
- Literature
- GO annotation
- KEGG, Biocyc - other regulatory and metabolic pathways
- First principles from systems theory (???)
- Define Class Project
- Objectives
- Scope
- Workflow
- Milestones
- Work packages
- Discuss
- Collaboration
- Development
- Testing
- Version control
- For next week
- Work through R Studio development tutorial (TBD)
- Work through github tutorial (TBD)
- Complete project plan
- Contribute to quiz questions
- More ... TBD
