BIO Reference data

Reference data

Annotated links to reference data for Bioinformatics course assignments.

Reference annotation yeast Mbp1

A reference annotation of the Saccharomyces cerevisiae Mbp1 protein sequence that integrates annotation sources we encounter throughout the course.

Reference species for fungi

Explanation and definition for the "reference species" we use for the course.

Reference APSES domain sequences (reference species)

Reference APSES domain sequences (reference species)

Reference alignment for APSES domains (MUSCLE, reference species)

Reference alignment for APSES domains (MUSCLE, reference species)

Reference tree for APSES domains

A phylogentic tree for all APSES domains found in the reference fungi.

Reference APSES domains (yeast)

All APSES domains from APSES domain proteins in saccharomyces cerevisiae - annotated.

Reference list of APSES protein sequences

Reference list of APSES protein sequences

Reference alignment for APSES domain proteins (PSI-BLAST)

Reference alignment for APSES domain proteins (PSI-BLAST)

Reference alignment for Mbp1 orthologues (MUSCLE)

A multiple sequence alignment for orthologues (by RBM) to saccharomyces cerevisiae Mbp1 - computed with MUSCLE.

Reference alignment for Mbp1 orthologues (T-COFFEE)

A multiple sequence alignment for orthologues (by RBM) to saccharomyces cerevisiae Mbp1 - computed with T-COFFEE.