Difference between revisions of "VMD"
Jump to navigation
Jump to search
| Line 4: | Line 4: | ||
'''VMD''' (viual molecular dynamics) is a powerful, well engineered, molecular graphics package. It is one of a number of freely available tools to visualize and manipulate three-dimensional molecular datasets, but it stands out due to its rich features, the versatility of its use and the ease with which common tasks can be accomplished and the fact that it is being actively developed and maintained. | '''VMD''' (viual molecular dynamics) is a powerful, well engineered, molecular graphics package. It is one of a number of freely available tools to visualize and manipulate three-dimensional molecular datasets, but it stands out due to its rich features, the versatility of its use and the ease with which common tasks can be accomplished and the fact that it is being actively developed and maintained. | ||
| + | | ||
| + | | ||
__TOC__ | __TOC__ | ||
| Line 10: | Line 12: | ||
#Access the [http://www.ks.uiuc.edu/Research/vmd/ VMD homepage] and navigate to the download section. | #Access the [http://www.ks.uiuc.edu/Research/vmd/ VMD homepage] and navigate to the download section. | ||
| − | #Follow the link to the newest version (1.8.6 as of this writing). | + | #Follow the link to the newest version (1.8.6 as of this writing) and review the features. |
| + | #Access the Download page and click on the link appropriate for your platform. Follow the instructions to install VMD. | ||
| + | |||
| + | |||
| + | ==Basic molecular models== | ||
| + | |||
| + | [TBC ...] | ||
Revision as of 03:52, 14 September 2007
A complex between a model of Mbp1 and a segment of DNA
The model was visualized and positioned in VMD - nucleotides were displayed as "licorice" sticks and the protein was covered by its solvent-accessible surface, calculated with a probe radius of 1.4 Å. Coloring is according to position. The scene was rendered with the tachyon raytracer using ambient occlusion lighting and 8-fold antialiasing.
The model was visualized and positioned in VMD - nucleotides were displayed as "licorice" sticks and the protein was covered by its solvent-accessible surface, calculated with a probe radius of 1.4 Å. Coloring is according to position. The scene was rendered with the tachyon raytracer using ambient occlusion lighting and 8-fold antialiasing.
VMD (viual molecular dynamics) is a powerful, well engineered, molecular graphics package. It is one of a number of freely available tools to visualize and manipulate three-dimensional molecular datasets, but it stands out due to its rich features, the versatility of its use and the ease with which common tasks can be accomplished and the fact that it is being actively developed and maintained.
Contents
Installing VMD
- Access the VMD homepage and navigate to the download section.
- Follow the link to the newest version (1.8.6 as of this writing) and review the features.
- Access the Download page and click on the link appropriate for your platform. Follow the instructions to install VMD.
Basic molecular models
[TBC ...]
