Difference between revisions of "BIN-SX-Ab initio prediction"

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<div id="BIO">
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<div id="ABC">
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<div style="padding:5px; border:1px solid #000000; background-color:#f2fafa; font-size:300%; font-weight:400; color: #000000; width:100%;">
 
Title
 
Title
  </div>
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<div style="padding:5px; margin-top:20px; margin-bottom:10px; background-color:#f2fafa; font-size:30%; font-weight:200; color: #000000; ">
 
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(''Ab initio'' prediction principles; Rosetta, i-TASSER, EVfold; CASP; Protein design)
  {{Vspace}}
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</div>
 
 
<div class="keywords">
 
<b>Keywords:</b>&nbsp;
 
''Ab initio'' prediction principles; Rosetta, i-TASSER, EVfold; CASP; Protein design
 
 
</div>
 
</div>
  
{{Vspace}}
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{{Smallvspace}}
 
 
 
 
__TOC__
 
 
 
{{Vspace}}
 
 
 
 
 
{{STUB}}
 
 
 
{{Vspace}}
 
  
  
</div>
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<div style="padding:5px; border:1px solid #000000; background-color:#f2fafa33; font-size:85%;">
<div id="ABC-unit-framework">
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<div style="font-size:118%;">
== Abstract ==
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<b>Abstract:</b><br />
 
<section begin=abstract />
 
<section begin=abstract />
<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "abstract" -->
 
 
...
 
...
 
<section end=abstract />
 
<section end=abstract />
 
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</div>
{{Vspace}}
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<!-- ============================  -->
 
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<hr>
 
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<table>
== This unit ... ==
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<tr>
=== Prerequisites ===
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<td style="padding:10px;">
<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "prerequisites" -->
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<b>Objectives:</b><br />
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...
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</td>
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<td style="padding:10px;">
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<b>Outcomes:</b><br />
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...
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</td>
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</tr>
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</table>
 +
<!-- ============================ -->
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<hr>
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<b>Deliverables:</b><br />
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<section begin=deliverables />
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<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-time_management" -->
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*<b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
 +
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" -->
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*<b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.
 +
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-insights" -->
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*<b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].
 +
<section end=deliverables />
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<!-- ============================  -->
 +
<hr>
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<section begin=prerequisites />
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<b>Prerequisites:</b><br />
 
<!-- included from "./data/ABC-unit_components.txt", section: "notes-external_prerequisites" -->
 
<!-- included from "./data/ABC-unit_components.txt", section: "notes-external_prerequisites" -->
 
You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:
 
You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:
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*<b>Biomolecules</b>: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.
 
*<b>Biomolecules</b>: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.
 
<!-- included from "./data/ABC-unit_components.txt", section: "notes-prerequisites" -->
 
<!-- included from "./data/ABC-unit_components.txt", section: "notes-prerequisites" -->
You need to complete the following units before beginning this one:
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This unit builds on material covered in the following prerequisite units:
 
*[[BIN-SX-Molecular_forcefields|BIN-SX-Molecular_forcefields (Molecular Forcefields)]]
 
*[[BIN-SX-Molecular_forcefields|BIN-SX-Molecular_forcefields (Molecular Forcefields)]]
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<section end=prerequisites />
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<!-- ============================  -->
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</div>
  
{{Vspace}}
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{{Smallvspace}}
  
  
=== Objectives ===
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{{STUB}}
<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "objectives" -->
 
...
 
  
{{Vspace}}
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{{Smallvspace}}
  
  
=== Outcomes ===
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__TOC__
<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "outcomes" -->
 
...
 
 
 
{{Vspace}}
 
 
 
 
 
=== Deliverables ===
 
<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "deliverables" -->
 
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-time_management" -->
 
*<b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
 
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-journal" -->
 
*<b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.
 
<!-- included from "./data/ABC-unit_components.txt", section: "deliverables-insights" -->
 
*<b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].
 
  
 
{{Vspace}}
 
{{Vspace}}
  
  
</div>
 
<div id="BIO">
 
 
== Contents ==
 
== Contents ==
 
<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "contents" -->
 
<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "contents" -->
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{{Vspace}}
 
 
 
== Further reading, links and resources ==
 
<!-- {{#pmid: 19957275}} -->
 
<!-- {{WWW|WWW_GMOD}} -->
 
<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
 
 
{{Vspace}}
 
 
 
== Notes ==
 
<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "notes" -->
 
<!-- included from "./data/ABC-unit_components.txt", section: "notes" -->
 
<references />
 
 
{{Vspace}}
 
 
 
</div>
 
<div id="ABC-unit-framework">
 
 
== Self-evaluation ==
 
== Self-evaluation ==
<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "self-evaluation" -->
 
 
<!--
 
<!--
 
=== Question 1===
 
=== Question 1===
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-->
 
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== Notes ==
{{Vspace}}
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<!-- included from "./components/BIN-SX-Ab_initio_prediction.components.txt", section: "notes" -->
 
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<!-- included from "./data/ABC-unit_components.txt", section: "notes" -->
 
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<references />
 +
== Further reading, links and resources ==
 +
<!-- {{#pmid: 19957275}} -->
 +
<!-- {{WWW|WWW_GMOD}} -->
 +
<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
  
 
{{Vspace}}
 
{{Vspace}}

Revision as of 19:32, 26 January 2018

Title

(Ab initio prediction principles; Rosetta, i-TASSER, EVfold; CASP; Protein design)


 


Abstract:

...


Objectives:
...

Outcomes:
...


Deliverables:

  • Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
  • Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
  • Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.

Prerequisites:
You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:

  • Biomolecules: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.

This unit builds on material covered in the following prerequisite units:


 


Sorry!

This page is only a stub; it is here as a placeholder to establish the logical framework of the site but there is no significant content as yet. Do not work with this material until it is updated to "live" status.


 



 


Contents

Task:


 


Self-evaluation

Notes

Further reading, links and resources

 




 

If in doubt, ask! If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.



 

About ...
 
Author:

Boris Steipe <boris.steipe@utoronto.ca>

Created:

2017-08-05

Modified:

2017-08-05

Version:

0.1

Version history:

  • 0.1 First stub

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