Difference between revisions of "BIN-SX-Ab initio prediction"

From "A B C"
Jump to navigation Jump to search
m
m
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
<div id="BIO">
+
<div id="ABC">
−
  <div class="b1">
+
<div style="padding:5px; border:1px solid #000000; background-color:#f2fafa; font-size:300%; font-weight:400; color: #000000; width:100%;">
 
Title
 
Title
−
  </div>
+
<div style="padding:5px; margin-top:20px; margin-bottom:10px; background-color:#f2fafa; font-size:30%; font-weight:200; color: #000000; ">
−
 
+
(''Ab initio'' prediction principles; Rosetta, i-TASSER, EVfold; CASP; Protein design)
−
  {{Vspace}}
+
</div>
−
 
 
−
<div class="keywords">
 
−
<b>Keywords:</b>&nbsp;
 
−
''Ab initio'' prediction principles; Rosetta, i-TASSER, EVfold; CASP; Protein design
 
 
</div>
 
</div>
  
−
{{Vspace}}
+
{{Smallvspace}}
−
 
 
  
−
__TOC__
 
  
−
{{Vspace}}
+
<div style="padding:5px; border:1px solid #000000; background-color:#f2fafa33; font-size:85%;">
−
 
+
<div style="font-size:118%;">
−
 
+
<b>Abstract:</b><br />
−
{{DEV}}
 
−
 
 
−
{{Vspace}}
 
−
 
 
−
 
 
−
</div>
 
−
<div id="ABC-unit-framework">
 
−
== Abstract ==
 
 
<section begin=abstract />
 
<section begin=abstract />
−
<!-- included from "../components/BIN-SX-Ab_initio_prediction.components.wtxt", section: "abstract" -->
 
 
...
 
...
 
<section end=abstract />
 
<section end=abstract />
−
 
+
</div>
−
{{Vspace}}
+
<!-- ============================  -->
−
 
+
<hr>
−
 
+
<table>
−
== This unit ... ==
+
<tr>
−
=== Prerequisites ===
+
<td style="padding:10px;">
−
<!-- included from "../components/BIN-SX-Ab_initio_prediction.components.wtxt", section: "prerequisites" -->
+
<b>Objectives:</b><br />
−
<!-- included from "ABC-unit_components.wtxt", section: "notes-external_prerequisites" -->
+
...
−
You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:
+
</td>
−
<!-- included from "FND-prerequisites.wtxt", section: "biomolecules" -->
+
<td style="padding:10px;">
 +
<b>Outcomes:</b><br />
 +
...
 +
</td>
 +
</tr>
 +
</table>
 +
<!-- ============================ -->
 +
<hr>
 +
<b>Deliverables:</b><br />
 +
<section begin=deliverables />
 +
<li><b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.</li>
 +
<li><b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.</li>
 +
<li><b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].</li>
 +
<section end=deliverables />
 +
<!-- ============================  -->
 +
<hr>
 +
<section begin=prerequisites />
 +
<b>Prerequisites:</b><br />
 +
You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:<br />
 
*<b>Biomolecules</b>: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.
 
*<b>Biomolecules</b>: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.
−
<!-- included from "ABC-unit_components.wtxt", section: "notes-prerequisites" -->
+
This unit builds on material covered in the following prerequisite units:<br />
−
You need to complete the following units before beginning this one:
+
*[[BIN-SX-Molecular_forcefields|BIN-SX-Molecular_forcefields (Molecular Forcefields)]]
−
*[[BIN-SX-Prediction_concepts]]
+
<section end=prerequisites />
 +
<!-- ============================  -->
 +
</div>
  
−
{{Vspace}}
+
{{Smallvspace}}
  
  
−
=== Objectives ===
+
{{STUB}}
−
<!-- included from "../components/BIN-SX-Ab_initio_prediction.components.wtxt", section: "objectives" -->
 
−
...
 
  
−
{{Vspace}}
+
{{Smallvspace}}
  
  
−
=== Outcomes ===
+
__TOC__
−
<!-- included from "../components/BIN-SX-Ab_initio_prediction.components.wtxt", section: "outcomes" -->
 
−
...
 
−
 
 
−
{{Vspace}}
 
−
 
 
−
 
 
−
=== Deliverables ===
 
−
<!-- included from "../components/BIN-SX-Ab_initio_prediction.components.wtxt", section: "deliverables" -->
 
−
<!-- included from "ABC-unit_components.wtxt", section: "deliverables-time_management" -->
 
−
*<b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
 
−
<!-- included from "ABC-unit_components.wtxt", section: "deliverables-journal" -->
 
−
*<b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.
 
−
<!-- included from "ABC-unit_components.wtxt", section: "deliverables-insights" -->
 
−
*<b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].
 
  
 
{{Vspace}}
 
{{Vspace}}
Line 76: Line 65:
  
 
=== Evaluation ===
 
=== Evaluation ===
−
<!-- included from "../components/BIN-SX-Ab_initio_prediction.components.wtxt", section: "evaluation" -->
 
−
<!-- included from "ABC-unit_components.wtxt", section: "eval-none" -->
 
 
<b>Evaluation: NA</b><br />
 
<b>Evaluation: NA</b><br />
−
:This unit is not evaluated for course marks.
+
<div style="margin-left: 2rem;">This unit is not evaluated for course marks.</div>
−
 
 
−
{{Vspace}}
 
−
 
 
−
 
 
−
</div>
 
−
<div id="BIO">
 
 
== Contents ==
 
== Contents ==
−
<!-- included from "../components/BIN-SX-Ab_initio_prediction.components.wtxt", section: "contents" -->
 
 
{{Task|1=
 
{{Task|1=
 
*Read the introductory notes on {{ABC-PDF|BIN-SX-Ab_inition_prediction|the ''ab initio'' prdiction of protein structure}}.
 
*Read the introductory notes on {{ABC-PDF|BIN-SX-Ab_inition_prediction|the ''ab initio'' prdiction of protein structure}}.
Line 96: Line 76:
  
  
−
 
−
{{Vspace}}
 
−
 
−
 
−
== Further reading, links and resources ==
 
−
<!-- {{#pmid: 19957275}} -->
 
−
<!-- {{WWW|WWW_GMOD}} -->
 
−
<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
 
−
 
−
{{Vspace}}
 
−
 
−
 
−
== Notes ==
 
−
<!-- included from "../components/BIN-SX-Ab_initio_prediction.components.wtxt", section: "notes" -->
 
−
<!-- included from "ABC-unit_components.wtxt", section: "notes" -->
 
−
<references />
 
−
 
−
{{Vspace}}
 
−
 
−
 
−
</div>
 
−
<div id="ABC-unit-framework">
 
 
== Self-evaluation ==
 
== Self-evaluation ==
−
<!-- included from "../components/BIN-SX-Ab_initio_prediction.components.wtxt", section: "self-evaluation" -->
 
 
<!--
 
<!--
 
=== Question 1===
 
=== Question 1===
Line 136: Line 93:
  
 
-->
 
-->
 +
== Further reading, links and resources ==
 +
<!-- {{#pmid: 19957275}} -->
 +
<!-- {{WWW|WWW_GMOD}} -->
 +
<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
 +
== Notes ==
 +
<references />
  
 
{{Vspace}}
 
{{Vspace}}
  
−
 
−
 
−
{{Vspace}}
 
−
 
−
 
−
<!-- included from "ABC-unit_components.wtxt", section: "ABC-unit_ask" -->
 
−
 
−
----
 
−
 
−
{{Vspace}}
 
−
 
−
<b>If in doubt, ask!</b> If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
 
−
 
−
----
 
−
 
−
{{Vspace}}
 
  
 
<div class="about">
 
<div class="about">
Line 170: Line 117:
 
*0.1 First stub
 
*0.1 First stub
 
</div>
 
</div>
−
[[Category:ABC-units]]
 
−
<!-- included from "ABC-unit_components.wtxt", section: "ABC-unit_footer" -->
 
  
 
{{CC-BY}}
 
{{CC-BY}}
  
 +
[[Category:ABC-units]]
 +
{{UNIT}}
 +
{{STUB}}
 
</div>
 
</div>
 
<!-- [END] -->
 
<!-- [END] -->

Latest revision as of 09:27, 25 September 2020

Title

(Ab initio prediction principles; Rosetta, i-TASSER, EVfold; CASP; Protein design)


 


Abstract:

...

Objectives:
...

Outcomes:
...

Deliverables:

  • Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
  • Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
  • Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.

    • Prerequisites:
    You need the following preparation before beginning this unit. If you are not familiar with this material from courses you took previously, you need to prepare yourself from other information sources:

    • Biomolecules: The molecules of life; nucleic acids and amino acids; the genetic code; protein folding; post-translational modifications and protein biochemistry; membrane proteins; biological function.

    This unit builds on material covered in the following prerequisite units:


     


    Sorry!

    This page is only a stub; it is here as a placeholder to establish the logical framework of the site but there is no significant content as yet. Do not work with this material until it is updated to "live" status.


     



     


    Evaluation

    Evaluation: NA

    This unit is not evaluated for course marks.

    Contents

    Task:


     


    Self-evaluation

    Further reading, links and resources

    Notes


     


    About ...
     
    Author:

    Boris Steipe <boris.steipe@utoronto.ca>

    Created:

    2017-08-05

    Modified:

    2017-08-05

    Version:

    0.1

    Version history:

    • 0.1 First stub

    CreativeCommonsBy.png This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License. Follow the link to learn more.

    Sorry!

    This page is only a stub; it is here as a placeholder to establish the logical framework of the site but there is no significant content as yet. Do not work with this material until it is updated to "live" status.

    Retrieved from "http://steipe.biochemistry.utoronto.ca/abc/index.php?title=BIN-SX-Ab_initio_prediction&oldid=11694"