Difference between revisions of "RPR-Plotting"

From "A B C"
Jump to navigation Jump to search
m
m
 
(9 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
<div id="BIO">
+
<div id="ABC">
−
  <div class="b1">
+
<div style="padding:5px; border:1px solid #000000; background-color:#b3dbce; font-size:300%; font-weight:400; color: #000000; width:100%;">
−
R Plots
+
Introduction to R Plots
−
  </div>
+
<div style="padding:5px; margin-top:20px; margin-bottom:10px; background-color:#b3dbce; font-size:30%; font-weight:200; color: #000000; ">
−
 
+
(Introduction to R plots)
−
  {{Vspace}}
+
</div>
−
 
 
−
<div class="keywords">
 
−
<b>Keywords:</b>&nbsp;
 
−
Plotting tutorial and reference
 
 
</div>
 
</div>
  
−
{{Vspace}}
+
{{Smallvspace}}
−
 
 
−
 
 
−
__TOC__
 
−
 
 
−
{{Vspace}}
 
−
 
 
−
 
 
−
{{DEV}}
 
−
 
 
−
{{Vspace}}
 
  
  
 +
<div style="padding:5px; border:1px solid #000000; background-color:#b3dbce33; font-size:85%;">
 +
<div style="font-size:118%;">
 +
<b>Abstract:</b><br />
 +
<section begin=abstract />
 +
Introductory concepts and exercises for creating graphics with R.
 +
<section end=abstract />
 +
</div>
 +
<!-- ============================  -->
 +
<hr>
 +
<table>
 +
<tr>
 +
<td style="padding:10px;">
 +
<b>Objectives:</b><br />
 +
This unit will ...
 +
* ... introduce concepts of graphics for data visualization and descrptive statistics;
 +
* ... teach basic plotting methods;
 +
</td>
 +
<td style="padding:10px;">
 +
<b>Outcomes:</b><br />
 +
After working through this unit you ...
 +
* ... know where to find models of good data visualization;
 +
* ... can create and customize basic plots in R;
 +
</td>
 +
</tr>
 +
</table>
 +
<!-- ============================  -->
 +
<hr>
 +
<b>Deliverables:</b><br />
 +
<section begin=deliverables />
 +
<u>
 +
<li><b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.</li>
 +
<li><b>Journal</b>: Document your progress in your [[FND-Journal|Course Journal]]. Some tasks may ask you to include specific items in your journal. Don't overlook these.</li>
 +
<li><b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|'''insights!''' page]].</li>
 +
</u>
 +
<section end=deliverables />
 +
<!-- ============================  -->
 +
<hr>
 +
<section begin=prerequisites />
 +
<b>Prerequisites:</b><br />
 +
This unit builds on material covered in the following prerequisite units:<br />
 +
*[[RPR-Functions|RPR-Functions (R Functions)]]
 +
<section end=prerequisites />
 +
<!-- ============================  -->
 
</div>
 
</div>
−
<div id="ABC-unit-framework">
 
−
== Abstract ==
 
−
<!-- included from "../components/RPR-Plotting.components.wtxt", section: "abstract" -->
 
−
...
 
  
−
{{Vspace}}
+
{{Smallvspace}}
  
  
−
== This unit ... ==
 
−
=== Prerequisites ===
 
−
<!-- included from "../components/RPR-Plotting.components.wtxt", section: "prerequisites" -->
 
−
<!-- included from "ABC-unit_components.wtxt", section: "notes-prerequisites" -->
 
−
You need to complete the following units before beginning this one:
 
−
*[[RPR-Functions]]
 
  
−
{{Vspace}}
+
{{Smallvspace}}
  
  
−
=== Objectives ===
+
__TOC__
−
<!-- included from "../components/RPR-Plotting.components.wtxt", section: "objectives" -->
 
−
...
 
−
 
 
−
{{Vspace}}
 
−
 
 
−
 
 
−
=== Outcomes ===
 
−
<!-- included from "../components/RPR-Plotting.components.wtxt", section: "outcomes" -->
 
−
...
 
−
 
 
−
{{Vspace}}
 
−
 
 
−
 
 
−
=== Deliverables ===
 
−
<!-- included from "../components/RPR-Plotting.components.wtxt", section: "deliverables" -->
 
−
<!-- included from "ABC-unit_components.wtxt", section: "deliverables-time_management" -->
 
−
*<b>Time management</b>: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
 
−
<!-- included from "ABC-unit_components.wtxt", section: "deliverables-journal" -->
 
−
*<b>Journal</b>: Document your progress in your [[FND-Journal|course journal]].
 
−
<!-- included from "ABC-unit_components.wtxt", section: "deliverables-insights" -->
 
−
*<b>Insights</b>: If you find something particularly noteworthy about this unit, make a note in your [[ABC-Insights|insights! page]].
 
  
 
{{Vspace}}
 
{{Vspace}}
Line 70: Line 68:
  
 
=== Evaluation ===
 
=== Evaluation ===
−
<!-- included from "../components/RPR-Plotting.components.wtxt", section: "evaluation" -->
 
−
<!-- included from "ABC-unit_components.wtxt", section: "eval-none" -->
 
 
<b>Evaluation: NA</b><br />
 
<b>Evaluation: NA</b><br />
−
:This unit is not evaluated for course marks.
+
<div style="margin-left: 2rem;">This unit is not evaluated for course marks.</div>
−
 
 
−
{{Vspace}}
 
−
 
 
−
 
 
−
</div>
 
−
<div id="BIO">
 
 
== Contents ==
 
== Contents ==
−
<!-- included from "../components/RPR-Plotting.components.wtxt", section: "contents" -->
 
  
 
{{Task|1=
 
{{Task|1=
−
* Read the introductory notes on {{ABC-PDF|RPR-Plotting|plotting and the visualization of relationships in data with R}}.
+
* Read the introductory notes on {{ABC-PDF|RPR-Plotting|graphics in R}} and concepts of graphics for descriptive statistics.
 +
 
 +
* Load the <code>R-Exercise_BasicSetup</code> project in RStudio if you don't already have it open.
 +
* Type <code>init()</code> as instructed after the project has loaded.
 +
* Work through the <code>plottingIntro.R</code> script.
 
}}
 
}}
  
Line 91: Line 84:
 
{{Vspace}}
 
{{Vspace}}
  
−
 
−
== Further reading, links and resources ==
 
−
<!-- {{#pmid: 19957275}} -->
 
−
<!-- {{WWW|WWW_GMOD}} -->
 
−
<!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> -->
 
−
 
−
{{Vspace}}
 
−
 
−
 
−
== Notes ==
 
−
<!-- included from "../components/RPR-Plotting.components.wtxt", section: "notes" -->
 
−
<!-- included from "ABC-unit_components.wtxt", section: "notes" -->
 
−
<references />
 
−
 
−
{{Vspace}}
 
−
 
−
 
−
</div>
 
−
<div id="ABC-unit-framework">
 
−
== Self-evaluation ==
 
−
<!-- included from "../components/RPR-Plotting.components.wtxt", section: "self-evaluation" -->
 
−
<!--
 
−
=== Question 1===
 
−
 
−
Question ...
 
−
 
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:800px">
 
−
Answer ...
 
−
<div class="mw-collapsible-content">
 
−
Answer ...
 
−
 
−
</div>
 
−
  </div>
 
−
 
−
  {{Vspace}}
 
−
 
−
-->
 
−
 
−
{{Vspace}}
 
−
 
−
 
−
 
−
{{Vspace}}
 
−
 
−
 
−
<!-- included from "ABC-unit_components.wtxt", section: "ABC-unit_ask" -->
 
−
 
−
----
 
−
 
−
{{Vspace}}
 
−
 
−
<b>If in doubt, ask!</b> If anything about this learning unit is not clear to you, do not proceed blindly but ask for clarification. Post your question on the course mailing list: others are likely to have similar problems. Or send an email to your instructor.
 
−
 
−
----
 
−
 
−
{{Vspace}}
 
  
 
<div class="about">
 
<div class="about">
Line 156: Line 93:
 
:2017-08-05
 
:2017-08-05
 
<b>Modified:</b><br />
 
<b>Modified:</b><br />
−
:2017-08-05
+
:2020-09-18
 
<b>Version:</b><br />
 
<b>Version:</b><br />
−
:0.1
+
:1.1
 
<b>Version history:</b><br />
 
<b>Version history:</b><br />
−
*0.1 First stub
+
*1.1 Maintenance, and mainy new examples in the plotting script
 +
*1.0.1 Maintenance
 +
*1.0 Completed to first live version
 +
*0.1 Material collected from previous tutorial
 
</div>
 
</div>
−
[[Category:ABC-units]]
 
−
<!-- included from "ABC-unit_components.wtxt", section: "ABC-unit_footer" -->
 
  
 
{{CC-BY}}
 
{{CC-BY}}
  
 +
[[Category:ABC-units]]
 +
{{UNIT}}
 +
{{LIVE}}
 
</div>
 
</div>
 
<!-- [END] -->
 
<!-- [END] -->

Latest revision as of 09:29, 25 September 2020

Introduction to R Plots

(Introduction to R plots)


 


Abstract:

Introductory concepts and exercises for creating graphics with R.

Objectives:
This unit will ...

  • ... introduce concepts of graphics for data visualization and descrptive statistics;
  • ... teach basic plotting methods;

Outcomes:
After working through this unit you ...

  • ... know where to find models of good data visualization;
  • ... can create and customize basic plots in R;

Deliverables:

  • Time management: Before you begin, estimate how long it will take you to complete this unit. Then, record in your course journal: the number of hours you estimated, the number of hours you worked on the unit, and the amount of time that passed between start and completion of this unit.
  • Journal: Document your progress in your Course Journal. Some tasks may ask you to include specific items in your journal. Don't overlook these.
  • Insights: If you find something particularly noteworthy about this unit, make a note in your insights! page.
    •

    Prerequisites:
    This unit builds on material covered in the following prerequisite units:


     



     



     


    Evaluation

    Evaluation: NA

    This unit is not evaluated for course marks.

    Contents

    Task:

    • Read the introductory notes on graphics in R and concepts of graphics for descriptive statistics.
    • Load the R-Exercise_BasicSetup project in RStudio if you don't already have it open.
    • Type init() as instructed after the project has loaded.
    • Work through the plottingIntro.R script.



     


    About ...
     
    Author:

    Boris Steipe <boris.steipe@utoronto.ca>

    Created:

    2017-08-05

    Modified:

    2020-09-18

    Version:

    1.1

    Version history:

    • 1.1 Maintenance, and mainy new examples in the plotting script
    • 1.0.1 Maintenance
    • 1.0 Completed to first live version
    • 0.1 Material collected from previous tutorial

    CreativeCommonsBy.png This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License. Follow the link to learn more.

    Retrieved from "http://steipe.biochemistry.utoronto.ca/abc/index.php?title=RPR-Plotting&oldid=11746"