Difference between revisions of "BCB420 Week02 Tasks"

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** KEGG, Biocyc - other regulatory and metabolic pathways
 
** KEGG, Biocyc - other regulatory and metabolic pathways
 
** First principles from systems theory (???)
 
** First principles from systems theory (???)
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* Define [http://steipe.biochemistry.utoronto.ca/abc/students/index.php/BCB420_2015_Project_PlanClass Project]
 
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** Objectives
 
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** Scope
 
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** Workflow
 
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** Milestones for [http://steipe.biochemistry.utoronto.ca/abc/students/index.php/BCB420_2015_Project_Plan#Preparations preparation phases I - III]
 
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** Work packages
 
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*Discuss Development topics
 
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** Habits (Projects, IDE and debugging, Version control)
 
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** Collaboration (Wiki, Git, Etherpad)
 
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** Development (TDD, Literate Development)
 
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** Testing (Unit testing, Integration testing)
 
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* R Package - Latex tutorial (TBD)
 
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* '''github''' tutorial (TBD)
 
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Latest revision as of 17:39, 21 January 2015

Week 2 Tasks


In Class

  • Questions
  • Quiz 1 and pickup
  • Explore system definitions and system discovery processes in submitted papers.
  • Discuss data relationships for functional annotation
    • Coexpression
    • Perturbation response (chemogenomics)
    • Interaction - physical and genetic
    • Similar genomic context
    • Gene fusion/fission events
    • Homology
    • Structure
    • Colocation
    • Literature
    • GO annotation
    • KEGG, Biocyc - other regulatory and metabolic pathways
    • First principles from systems theory (???)


 

For next week


 

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