Difference between revisions of "BCB420 Week02 Tasks"

Latest revision as of 17:39, 21 January 2015

Week 2 Tasks

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-;Contents
+==In Class==
+* Questions
 * Quiz 1 and pickup
-*Explore system definitions and system discovery processes in submitted papers.
+----
-*Define Class Project
-** Objectives
+* Explore system definitions and system discovery processes in submitted papers.
-** Scope
+* Discuss data relationships for functional annotation
-** Workflow
+** Coexpression
-** Milestones
+** Perturbation response (chemogenomics)
-** Work packages
+** Interaction - physical and genetic
+** Similar genomic context
+** Gene fusion/fission events
+** Homology
+** Structure
+** Colocation
+** Literature
+** GO annotation
+** KEGG, Biocyc - other regulatory and metabolic pathways
+** First principles from systems theory (???)
-*Discuss
-** Collaboration
-** Development
-** Testing
-** Version control
-----
+&nbsp;
-;For next week
+==For next week==
-*Work through '''R Studio''' development tutorial (TBD)
+*Work through [[Software_Development|Software development page]]
-*Work through '''github''' tutorial (TBD)
+*Work through [[R_knitr|'''R Studio''' literal programming with knitr]]
-*Complete project plan
+*Study databases and strategies
+*Draft project workflows
 *Contribute to quiz questions
 *More ... TBD
 ----
 &nbsp;