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| − | <div style="padding: 5px; background: #457DB5; border:solid 1px #AAAAAA; font-size:300%;font-weight:bold;">
| + | #REDIRECT [[Bioinformatics_Main_Page]] |
| − | BCH441 - Bioinformatics
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| − | <div style="font-size:50%;font-weight:normal;">
| + | {{Vspace}} |
| − | Welcome to the BCH441 Course Wiki.
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| − | </div>
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| − | </div>
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| | + | <div id="BIO"> |
| | + | <div class="b1" style="padding-left:7%;"> |
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| | + | <br/> |
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| | + | <div style="font-size:150%;font-weight:bold;"> |
| | + | [[Bioinformatics_Main_Page|<span style="color:#FFFFFF;">A B C</span>]] |
| | + | </div> |
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| | + | [[Bioinformatics_Main_Page|<span style="color:#FFFFFF;">Applying Bioinformatics Concepts</span>]] |
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| | + | <div style="font-size:50%;font-weight:bold;"> |
| | + | [[Bioinformatics_Main_Page|<span style="color:#FFFFFF;">Boris Steipe (2006 – 2020)</span>]] |
| | + | </div> |
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| − | <small>'''This is our main tool to coordinate information, activities and projects in University of Toronto's bioinformatics course BCH441'''. If you are not one of our students, you can still browse this site, however only users with a login account can edit or contribute or edit material. If you are here because you are interested in general aspects of bioinformatics or computational biology, you may want to review the [http://en.wikipedia.org/wiki/Bioinformatics Wikipedia article on bioinformatics], or visit [http://wikiomics.org/wiki/Main_Page Wikiomics]. Contact boris.steipe(at)utoronto.ca with any questions you may have.</small> | + | <br/> |
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| − | == Organization ==
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| − |
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| − | '''The first lecture of the 2007 Fall term will be held Monday, Sept. 10, 12:00.'''
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| − |
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| − | ;Dates
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| − | :Monday and Thursday, 12:00 to 13:00
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| − | :<small>A tutorial session for Bioinformatics and Computational Biology Specialists will be offered Mondays, from 13:00 to 14:00.</small>
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| − |
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| − | ;Location
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| − | :MSB 2173
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| − |
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| − | See the [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Course Web page] for general information.
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| − |
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| − | == Lecture Schedule ==
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| − | <div style="padding: 2px; background: #FF4560; border:solid 2px #000000;">
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| − | '''Update Warning!''' Material below this mark has not been revised yet for the 2007 Fall term and may be out of date.
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| | </div> | | </div> |
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| + | </div> |
| − | <small>(This schedule is for orientation only, changes may be made at any time as the subject matter and the progress of the lecture requires.)</small>
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| − | | |
| − | <ol start="1">
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| − | <li>[[Lecture_01|Organisation and Orientation]] (Boris, Monday, Sept. 10)
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| − | </ol>
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| − | | |
| − | ;Sequences
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| − | <ol start="2">
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| − | <li>[[Lecture_02|The Sequence Abstraction]] (Boris, Thursday, Sept. 13)
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| − | <li>[[Lecture_03|Sequence Properties]] (Boris, Monday, Sept. 17)
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| − | <li>[[Lecture_04|Sequence Analysis]] (Boris, Thursday, Sept. 20)
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| − | <li>[[Lecture_05|Homology I: the principles]] (Boris, Monday, Sept. 24)
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| − | <li>[[Lecture_06|Homology II: Sequence Alignment]] (Boris, Thursday, Sept. 27)
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| − | </ol>
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| − | ;Structures
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| − | <ol start="7">
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| − | <li>[[Lecture_07|Protein Structure Databases]] (Boris, Monday, Oct. 1)
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| − | <li>[[Lecture_08|Structural Domains]] (Boris, Thursday, Oct. 4)
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| − | <li>[[Lecture_09|Interpreting Protein Structure]] (Boris, Monday, Oct. 8)
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| − | <li>[[Lecture_10|Homology Modeling]] (Boris, Thursday, Oct. 11)
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| − | <li>[[Lecture_11|Protein Structure Prediction]] (Boris, Monday, Oct. 15)
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| − | <li>[[Lecture_12|Multiple Sequence Alignment]] (Boris, Thursday, Oct. 18)
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| − | </ol>
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| − | ;Genomes
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| − | <ol start="13">
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| − | <li>[[Lecture_13|Genome Sequencing]] (John, Monday, Oct. 22)
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| − | <li>[[Lecture_14|Genomes]] (John, Thursday, Oct. 25)
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| − | <li>[[Lecture_15|Functional Annotation]] (Shoshana, Monday, Oct. 29)
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| − | <li>[[Lecture_16|Fast Sequence Database searches]] (Boris, Thursday, Nov. 1)
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| − | </ol>
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| − | ;Evolution
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| − | <ol start="17">
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| − | <li>[[Lecture_17|Phylogenetic Analysis]] (Boris, Monday, Nov. 5)
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| − | <li>[[Lecture_18|Clinical Genomics]] (Boris, Thursday, Nov. 8)
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| − | <li>[[Lecture_19|Comparative Genomics]] (John, Monday, Nov. 12)
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| − | </ol>
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| − | ;Systems
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| − | <ol start="20">
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| − | <li>[[Lecture_20|Proteomics]] (Boris, Thursday, Nov. 15)
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| − | <li>[[Lecture_21|Microarray Expression Analysis]] (Boris, Monday, Nov. 19)
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| − | <li>[[Lecture_22|Gene regulation I]] (Shoshana, Thursday, Nov. 22)
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| − | <li>[[Lecture_23|Gene regulation II]] (Shoshana, Monday, Nov. 26)
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| − | <li>[[Lecture_24|Interaction Databases]] (Shoshana, Thursday, Nov. 29)
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| − | <li>[[Lecture_25|Pathways and Networks]] (Gary Bader, Monday, Dec. 3)
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| − | <li>[[Lecture_26|Computational Systems Biology]] (John, Thursday, Dec. 7)
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| − | </ol>
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| − | | |
| − | == Assignments ==
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| − | <table border="0" cellpadding="5">
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| − | <tr>
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| − | <td>[[Assignment_1|'''First Assignment''']]</td>
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| − | <td>Databases and Molecular Models</td>
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| − | <td>''to be posted Sept. 13, due Oct. 1.''</td>
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| − | </tr>
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| − | | |
| − | <tr>
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| − | <td>[[Assignment_2|'''Second Assignment''']]</td>
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| − | <td>Search, Retrieve and Annotate</td>
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| − | <td>''to be posted Sept. 24, due Oct. 8.''</td>
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| − | </tr>
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| − | | |
| − | <tr>
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| − | <td>[[Assignment_3|'''Third Assignment''']]</td>
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| − | <td>Multiple Sequence Alignment</td>
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| − | <td>''to be posted Oct. 8, due Oct. 22.''</td>
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| − | </tr>
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| − | | |
| − | <tr>
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| − | <td>[[Assignment_4|'''Fourth Assignment''']]</td>
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| − | <td>Phylogenetic Analysis</td>
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| − | <td>''to be posted Oct. 22, due Nov. 5.''</td>
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| − | </tr>
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| − | | |
| − | <tr>
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| − | <td>[[Assignment_5|'''Fifth Assignment''']]</td>
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| − | <td>Homology Modeling</td>
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| − | <td>''to be posted Nov. 5, due Nov. 19.''</td>
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| − | </tr>
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| − | | |
| − | <tr>
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| − | <td>[[Assignment_6|'''Sixth Assignment''']]</td>
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| − | <td>Systems</td>
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| − | <td>''to be posted Nov. 19, due Dec. 3.''</td>
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| − | </tr>
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| − | </table>
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| − |
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| − | | |
| − | ==In depth...==
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| − | | |
| − | * [[Glossary]]
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| − | * [[Mutation Data Matrices]]
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| − | <!-- * [[Database Identifiers]]
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| − | * [[Stereo Vision]] -->
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| − | | |
| − | == Resources ==
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| − | <br>
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| − | | |
| − | ;Course Wiki
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| − | *[[Help:Introduction|Introduction:]] Concept and contents of the Course Wiki
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| − | *[[Soapbox]]: A page to commmunicate. Do you want to leave a message? Alert the course members? Voice an opinion? Praise or flame? Use this page.
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| − | *[[Help:Editing| Editing:]] Editing principles and Wiki markup syntax for the Course Wiki pages
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| − | *[[Sandbox]]: A page for your editing experiments. Content added to this page will not stay permanently.
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| − | *[[Feedback]]: Share your views on the course, suggest improvements.
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| − | <br>
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| − | *[http://biodatabase.org/index.php/Main_Page MetaDatabase]
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| − | <br>
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| − | | |
| − | ;[[Exam_questions]]
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| − | <br>
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| − | <br>
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| − | | |
| − | ;Course Web
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| − | *The [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Course Web site].
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| − | | |
| − | | |
| − | <!--- Color schemes
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| − | <div style="padding: 3px; background: #457DB5; border:solid 1px #AAAAAA;">Level 1</div>
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| − |
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| − | <div style="padding: 3px; background: #6F9BD0; border:solid 1px #AAAAAA;">Level 2</div>
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| − |
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| − | <div style="padding: 3px; background: #9CC86F; border:solid 1px #AAAAAA;">Level 3</div>
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| − |
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| − | <div style="padding: 3px; background: #F0F07A; border:solid 1px #AAAAAA;">Alert</div>
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| − |
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| − | <div style="padding: 3px; background: #FF4560; border:solid 1px #AAAAAA;">Warning!</div>
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| − |
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| − | --->
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