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| | + | <!-- div style="padding: 5px; background: #FF4560; border:solid 2px #000000;"> |
| | + | '''Update Warning!''' |
| | + | This page has not been revised yet for the 2008 Fall term. Some of the slides may be reused, but please consider the page as a whole out of date as long as this warning appears here. |
| | + | </div --> |
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| | __NOTOC__ | | __NOTOC__ |
| | <small>[[Lecture_20|(Previous lecture)]] ... [[Lecture_22|(Next lecture)]]</small> | | <small>[[Lecture_20|(Previous lecture)]] ... [[Lecture_22|(Next lecture)]]</small> |
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| − | ==Microarray Analysis== | + | ==Gene Regulation II== |
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| − | ...
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| − | Add:
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| − | * Summary points
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| − | * Exercises
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| − | * Further reading
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| − | (Some of the slides in this lecture are based on material delivered by John Quackenbush at the February 2006 [http://www.bioinformatics.ca '''CBW workshop'''] in Toronto.)
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| − | | |
| − | ==Lecture Slides==
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| − | ======Slide 001======
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| − | [[Image:L21_s001.jpg|frame|none|Lecture 21, Slide 001<br>
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| − | ]]
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| − | ======Slide 002======
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| − | [[Image:L21_s002.jpg|frame|none|Lecture 21, Slide 002<br>
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| − | ]]
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| − | ======Slide 003======
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| − | [[Image:L21_s003.jpg|frame|none|Lecture 21, Slide 003<br>
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| − | ]]
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| − | ======Slide 004======
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| − | [[Image:L21_s004.jpg|frame|none|Lecture 21, Slide 004<br>
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| − | ]]
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| − | ======Slide 005======
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| − | [[Image:L21_s005.jpg|frame|none|Lecture 21, Slide 005<br>
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| − | ]]
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| − | ======Slide 006======
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| − | [[Image:L21_s006.jpg|frame|none|Lecture 21, Slide 006<br>
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| − | ]]
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| − | ======Slide 007======
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| − | [[Image:L21_s007.jpg|frame|none|Lecture 21, Slide 007<br>
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| − | ]]
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| − | ======Slide 008======
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| − | [[Image:L21_s008.jpg|frame|none|Lecture 21, Slide 008<br>
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| − | Rogojina ''et al.'' (2003) Use of Affymetrix to spotted oligonucleotide microarrays using two retinal epithelial cell lines. Molecular Vision 9:482-96
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| − | ]]
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| − | | |
| − | ======Slide 009======
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| − | [[Image:L21_s009.jpg|frame|none|Lecture 21, Slide 009<br>
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| − | ]]
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| − | ======Slide 010======
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| − | [[Image:L21_s010.jpg|frame|none|Lecture 21, Slide 010<br>
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| − | ======Slide 011======
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| − | [[Image:L21_s011.jpg|frame|none|Lecture 21, Slide 011<br>
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| − | ======Slide 012======
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| − | [[Image:L21_s012.jpg|frame|none|Lecture 21, Slide 012<br>
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| − | ======Slide 013======
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| − | [[Image:L21_s013.jpg|frame|none|Lecture 21, Slide 013<br>
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| − | ]]
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| − | ======Slide 014======
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| − | [[Image:L21_s014.jpg|frame|none|Lecture 21, Slide 014<br>
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| − | ======Slide 015======
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| − | [[Image:L21_s015.jpg|frame|none|Lecture 21, Slide 015<br>
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| − | ]]
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| − | ======Slide 016======
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| − | [[Image:L21_s016.jpg|frame|none|Lecture 21, Slide 016<br>
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| − | Writeup in [http://bioinformatics.oxfordjournals.org/cgi/reprint/19/5/651 Pertea ''et al.'' (2003) Bioinformatics '''19''':651-652]
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| − | ]]
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| − | | |
| − | ======Slide 017======
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| − | [[Image:L21_s017.jpg|frame|none|Lecture 21, Slide 017<br>
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| − | ======Slide 018======
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| − | [[Image:L21_s018.jpg|frame|none|Lecture 21, Slide 018<br>
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| − | ======Slide 019======
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| − | [[Image:L21_s019.jpg|frame|none|Lecture 21, Slide 019<br>
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| − | ======Slide 020======
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| − | [[Image:L21_s020.jpg|frame|none|Lecture 21, Slide 020<br>
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| − | ======Slide 021======
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| − | [[Image:L21_s021.jpg|frame|none|Lecture 21, Slide 021<br>
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| − | ======Slide 022======
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| − | [[Image:L21_s022.jpg|frame|none|Lecture 21, Slide 022<br>
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| − | ======Slide 023======
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| − | [[Image:L21_s023.jpg|frame|none|Lecture 21, Slide 023<br>
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| − | ======Slide 024======
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| − | [[Image:L21_s024.jpg|frame|none|Lecture 21, Slide 024<br>
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| − | ======Slide 025======
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| − | [[Image:L21_s025.jpg|frame|none|Lecture 21, Slide 025<br>
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| − | ======Slide 026======
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| − | [[Image:L21_s026.jpg|frame|none|Lecture 21, Slide 026<br>
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| − | ======Slide 027======
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| − | [[Image:L21_s027.jpg|frame|none|Lecture 21, Slide 027<br>
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| − | (From J. Quackenbush) Bulk of genes lie on zero-line but there is evidence of differential expression
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| − | ]]
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| − | | |
| − | ======Slide 028======
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| − | [[Image:L21_s028.jpg|frame|none|Lecture 21, Slide 028<br>
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| − | ======Slide 029======
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| − | [[Image:L21_s029.jpg|frame|none|Lecture 21, Slide 029<br>
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| − | ======Slide 030======
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| − | [[Image:L21_s030.jpg|frame|none|Lecture 21, Slide 030<br>
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| − | ======Slide 031======
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| − | [[Image:L21_s031.jpg|frame|none|Lecture 21, Slide 031<br>
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| − | ======Slide 032======
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| − | [[Image:L21_s032.jpg|frame|none|Lecture 21, Slide 032<br>
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| − | Variance stabilization is available e.g. within the MIDAS package.
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| − | ]]
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| − | ======Slide 033======
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| − | [[Image:L21_s033.jpg|frame|none|Lecture 21, Slide 033<br>
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| − | ======Slide 034======
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| − | [[Image:L21_s034.jpg|frame|none|Lecture 21, Slide 034<br>
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| − | Synonymous: Expression profile
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| − | ]]
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| − | ======Slide 035======
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| − | [[Image:L21_s035.jpg|frame|none|Lecture 21, Slide 035<br>
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| − | ======Slide 036======
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| − | [[Image:L21_s036.jpg|frame|none|Lecture 21, Slide 036<br>
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| − | ======Slide 037======
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| − | [[Image:L21_s037.jpg|frame|none|Lecture 21, Slide 037<br>
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| − | ======Slide 038======
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| − | [[Image:L21_s038.jpg|frame|none|Lecture 21, Slide 038<br>
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| − | ======Slide 039======
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| − | [[Image:L21_s039.jpg|frame|none|Lecture 21, Slide 039<br>
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| − | ======Slide 040======
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| − | [[Image:L21_s040.jpg|frame|none|Lecture 21, Slide 040<br>
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| − | ======Slide 041======
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| − | [[Image:L21_s041.jpg|frame|none|Lecture 21, Slide 041<br>
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| − | ======Slide 042======
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| − | [[Image:L21_s042.jpg|frame|none|Lecture 21, Slide 042<br>
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| − | ======Slide 043======
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| − | [[Image:L21_s043.jpg|frame|none|Lecture 21, Slide 043<br>
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| − | ======Slide 044======
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| − | [[Image:L21_s044.jpg|frame|none|Lecture 21, Slide 044<br>
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| − | ======Slide 045======
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| − | [[Image:L21_s045.jpg|frame|none|Lecture 21, Slide 045<br>
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| − | ======Slide 046======
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| − | [[Image:L21_s046.jpg|frame|none|Lecture 21, Slide 046<br>
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| − | ======Slide 047======
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| − | [[Image:L21_s047.jpg|frame|none|Lecture 21, Slide 047<br>
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| − | ======Slide 048======
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| − | [[Image:L21_s048.jpg|frame|none|Lecture 21, Slide 048<br>
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| − | ======Slide 049======
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| − | [[Image:L21_s049.jpg|frame|none|Lecture 21, Slide 049<br>
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| − | ======Slide 050======
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| − | [[Image:L21_s050.jpg|frame|none|Lecture 21, Slide 050<br>
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| − | ======Slide 051======
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| − | [[Image:L21_s051.jpg|frame|none|Lecture 21, Slide 051<br>
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| − | ]]
| + | * Lecture slides are linked from the previous lecture (same file). |
