Difference between revisions of "Lecture 19"

From "A B C"
Jump to navigation Jump to search
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
 +
<div style="padding: 5px; background: #FF4560;  border:solid 2px #000000;">
 +
'''Update Warning!'''
 +
This page has not been revised yet for the 2007 Fall term. Some of the slides may be reused, but please consider the page as a whole out of date as long as this warning appears here.
 +
</div>
 +
&nbsp;
 +
 +
&nbsp;
 +
 +
 
__NOTOC__
 
__NOTOC__
−
<small>[[Lecture_20|(Previous lecture)]] ... [[Lecture_22|(Next lecture)]]</small>  
+
<small>[[Lecture_18|(Previous lecture)]] ... [[Lecture_20|(Next lecture)]]</small>  
  
−
==Microarray Analysis==
+
==Comparative Genomics==
  
 
...
 
...
  
−
Add:
+
<!-- Add:
 
* Summary points
 
* Summary points
 
* Exercises
 
* Exercises
−
* Further reading
+
* Further reading -->
  
−
 
−
(Some of the slides in this lecture are based on material delivered by John Quackenbush at the February 2006 [http://www.bioinformatics.ca '''CBW workshop'''] in Toronto.)
 
  
 
==Lecture Slides==
 
==Lecture Slides==
Line 18: Line 25:
  
 
======Slide 001======
 
======Slide 001======
−
[[Image:L21_s001.jpg|frame|none|Lecture 21, Slide 001<br>
+
[[Image:L19_s001.jpg|frame|none|Lecture 19, Slide 001<br>
  
 
]]
 
]]
 
======Slide 002======
 
======Slide 002======
−
[[Image:L21_s002.jpg|frame|none|Lecture 21, Slide 002<br>
+
[[Image:L19_s002.jpg|frame|none|Lecture 19, Slide 002<br>
  
 
]]
 
]]
 
======Slide 003======
 
======Slide 003======
−
[[Image:L21_s003.jpg|frame|none|Lecture 21, Slide 003<br>
+
[[Image:L19_s003.jpg|frame|none|Lecture 19, Slide 003<br>
  
 
]]
 
]]
 
======Slide 004======
 
======Slide 004======
−
[[Image:L21_s004.jpg|frame|none|Lecture 21, Slide 004<br>
+
[[Image:L19_s004.jpg|frame|none|Lecture 19, Slide 004<br>
  
 
]]
 
]]
 
======Slide 005======
 
======Slide 005======
−
[[Image:L21_s005.jpg|frame|none|Lecture 21, Slide 005<br>
+
[[Image:L19_s005.jpg|frame|none|Lecture 19, Slide 005<br>
  
 
]]
 
]]
 
======Slide 006======
 
======Slide 006======
−
[[Image:L21_s006.jpg|frame|none|Lecture 21, Slide 006<br>
+
[[Image:L19_s006.jpg|frame|none|Lecture 19, Slide 006<br>
  
 
]]
 
]]
 
======Slide 007======
 
======Slide 007======
−
[[Image:L21_s007.jpg|frame|none|Lecture 21, Slide 007<br>
+
[[Image:L19_s007.jpg|frame|none|Lecture 19, Slide 007<br>
  
 
]]
 
]]
 
======Slide 008======
 
======Slide 008======
−
[[Image:L21_s008.jpg|frame|none|Lecture 21, Slide 008<br>
+
[[Image:L19_s008.jpg|frame|none|Lecture 19, Slide 008<br>
−
Rogojina ''et al.'' (2003) Use of Affymetrix to spotted oligonucleotide microarrays using two retinal epithelial cell lines. Molecular Vision 9:482-96
+
 
 
]]
 
]]
−
 
 
======Slide 009======
 
======Slide 009======
−
[[Image:L21_s009.jpg|frame|none|Lecture 21, Slide 009<br>
+
[[Image:L19_s009.jpg|frame|none|Lecture 19, Slide 009<br>
  
 
]]
 
]]
 
======Slide 010======
 
======Slide 010======
−
[[Image:L21_s010.jpg|frame|none|Lecture 21, Slide 010<br>
+
[[Image:L19_s010.jpg|frame|none|Lecture 19, Slide 010<br>
  
 
]]
 
]]
 
======Slide 011======
 
======Slide 011======
−
[[Image:L21_s011.jpg|frame|none|Lecture 21, Slide 011<br>
+
[[Image:L19_s011.jpg|frame|none|Lecture 19, Slide 011<br>
  
 
]]
 
]]
 
======Slide 012======
 
======Slide 012======
−
[[Image:L21_s012.jpg|frame|none|Lecture 21, Slide 012<br>
+
[[Image:L19_s012.jpg|frame|none|Lecture 19, Slide 012<br>
  
 
]]
 
]]
 
======Slide 013======
 
======Slide 013======
−
[[Image:L21_s013.jpg|frame|none|Lecture 21, Slide 013<br>
+
[[Image:L19_s013.jpg|frame|none|Lecture 19, Slide 013<br>
  
 
]]
 
]]
 
======Slide 014======
 
======Slide 014======
−
[[Image:L21_s014.jpg|frame|none|Lecture 21, Slide 014<br>
+
[[Image:L19_s014.jpg|frame|none|Lecture 19, Slide 014<br>
  
 
]]
 
]]
 
======Slide 015======
 
======Slide 015======
−
[[Image:L21_s015.jpg|frame|none|Lecture 21, Slide 015<br>
+
[[Image:L19_s015.jpg|frame|none|Lecture 19, Slide 015<br>
  
 
]]
 
]]
 
======Slide 016======
 
======Slide 016======
−
[[Image:L21_s016.jpg|frame|none|Lecture 21, Slide 016<br>
+
[[Image:L19_s016.jpg|frame|none|Lecture 19, Slide 016<br>
−
Writeup in [http://bioinformatics.oxfordjournals.org/cgi/reprint/19/5/651 Pertea ''et al.'' (2003) Bioinformatics '''19''':651-652]
+
 
 
]]
 
]]
−
 
 
======Slide 017======
 
======Slide 017======
−
[[Image:L21_s017.jpg|frame|none|Lecture 21, Slide 017<br>
+
[[Image:L19_s017.jpg|frame|none|Lecture 19, Slide 017<br>
  
 
]]
 
]]
 
======Slide 018======
 
======Slide 018======
−
[[Image:L21_s018.jpg|frame|none|Lecture 21, Slide 018<br>
+
[[Image:L19_s018.jpg|frame|none|Lecture 19, Slide 018<br>
  
 
]]
 
]]
 
======Slide 019======
 
======Slide 019======
−
[[Image:L21_s019.jpg|frame|none|Lecture 21, Slide 019<br>
+
[[Image:L19_s019.jpg|frame|none|Lecture 19, Slide 019<br>
  
 
]]
 
]]
 
======Slide 020======
 
======Slide 020======
−
[[Image:L21_s020.jpg|frame|none|Lecture 21, Slide 020<br>
+
[[Image:L19_s020.jpg|frame|none|Lecture 19, Slide 020<br>
  
 
]]
 
]]
 
======Slide 021======
 
======Slide 021======
−
[[Image:L21_s021.jpg|frame|none|Lecture 21, Slide 021<br>
+
[[Image:L19_s021.jpg|frame|none|Lecture 19, Slide 021<br>
  
 
]]
 
]]
 
======Slide 022======
 
======Slide 022======
−
[[Image:L21_s022.jpg|frame|none|Lecture 21, Slide 022<br>
+
[[Image:L19_s022.jpg|frame|none|Lecture 19, Slide 022<br>
  
 
]]
 
]]
 
======Slide 023======
 
======Slide 023======
−
[[Image:L21_s023.jpg|frame|none|Lecture 21, Slide 023<br>
+
[[Image:L19_s023.jpg|frame|none|Lecture 19, Slide 023<br>
  
 
]]
 
]]
 
======Slide 024======
 
======Slide 024======
−
[[Image:L21_s024.jpg|frame|none|Lecture 21, Slide 024<br>
+
[[Image:L19_s024.jpg|frame|none|Lecture 19, Slide 024<br>
  
 
]]
 
]]
 
======Slide 025======
 
======Slide 025======
−
[[Image:L21_s025.jpg|frame|none|Lecture 21, Slide 025<br>
+
[[Image:L19_s025.jpg|frame|none|Lecture 19, Slide 025<br>
  
 
]]
 
]]
 
======Slide 026======
 
======Slide 026======
−
[[Image:L21_s026.jpg|frame|none|Lecture 21, Slide 026<br>
+
[[Image:L19_s026.jpg|frame|none|Lecture 19, Slide 026<br>
  
 
]]
 
]]
 
======Slide 027======
 
======Slide 027======
−
[[Image:L21_s027.jpg|frame|none|Lecture 21, Slide 027<br>
+
[[Image:L19_s027.jpg|frame|none|Lecture 19, Slide 027<br>
−
(From J. Quackenbush) Bulk of genes lie on zero-line but there is evidence of differential expression
+
 
 
]]
 
]]
−
 
 
======Slide 028======
 
======Slide 028======
−
[[Image:L21_s028.jpg|frame|none|Lecture 21, Slide 028<br>
+
[[Image:L19_s028.jpg|frame|none|Lecture 19, Slide 028<br>
  
 
]]
 
]]
 
======Slide 029======
 
======Slide 029======
−
[[Image:L21_s029.jpg|frame|none|Lecture 21, Slide 029<br>
+
[[Image:L19_s029.jpg|frame|none|Lecture 19, Slide 029<br>
  
 
]]
 
]]
 
======Slide 030======
 
======Slide 030======
−
[[Image:L21_s030.jpg|frame|none|Lecture 21, Slide 030<br>
+
[[Image:L19_s030.jpg|frame|none|Lecture 19, Slide 030<br>
−
 
 
−
]]
 
−
======Slide 031======
 
−
[[Image:L21_s031.jpg|frame|none|Lecture 21, Slide 031<br>
 
−
 
 
−
]]
 
−
======Slide 032======
 
−
[[Image:L21_s032.jpg|frame|none|Lecture 21, Slide 032<br>
 
−
Variance stabilization is available e.g. within the MIDAS package.
 
−
]]
 
−
 
 
−
======Slide 033======
 
−
[[Image:L21_s033.jpg|frame|none|Lecture 21, Slide 033<br>
 
−
 
 
−
]]
 
−
======Slide 034======
 
−
[[Image:L21_s034.jpg|frame|none|Lecture 21, Slide 034<br>
 
−
Synonymous: Expression profile
 
−
]]
 
−
 
 
−
======Slide 035======
 
−
[[Image:L21_s035.jpg|frame|none|Lecture 21, Slide 035<br>
 
−
 
 
−
]]
 
−
======Slide 036======
 
−
[[Image:L21_s036.jpg|frame|none|Lecture 21, Slide 036<br>
 
−
 
 
−
]]
 
−
======Slide 037======
 
−
[[Image:L21_s037.jpg|frame|none|Lecture 21, Slide 037<br>
 
−
 
 
−
]]
 
−
======Slide 038======
 
−
[[Image:L21_s038.jpg|frame|none|Lecture 21, Slide 038<br>
 
−
 
 
−
]]
 
−
======Slide 039======
 
−
[[Image:L21_s039.jpg|frame|none|Lecture 21, Slide 039<br>
 
−
 
 
−
]]
 
−
======Slide 040======
 
−
[[Image:L21_s040.jpg|frame|none|Lecture 21, Slide 040<br>
 
−
 
 
−
]]
 
−
======Slide 041======
 
−
[[Image:L21_s041.jpg|frame|none|Lecture 21, Slide 041<br>
 
−
 
 
−
]]
 
−
======Slide 042======
 
−
[[Image:L21_s042.jpg|frame|none|Lecture 21, Slide 042<br>
 
−
 
 
−
]]
 
−
======Slide 043======
 
−
[[Image:L21_s043.jpg|frame|none|Lecture 21, Slide 043<br>
 
−
 
 
−
]]
 
−
======Slide 044======
 
−
[[Image:L21_s044.jpg|frame|none|Lecture 21, Slide 044<br>
 
−
 
 
−
]]
 
−
======Slide 045======
 
−
[[Image:L21_s045.jpg|frame|none|Lecture 21, Slide 045<br>
 
−
 
 
−
]]
 
−
======Slide 046======
 
−
[[Image:L21_s046.jpg|frame|none|Lecture 21, Slide 046<br>
 
−
 
 
−
]]
 
−
======Slide 047======
 
−
[[Image:L21_s047.jpg|frame|none|Lecture 21, Slide 047<br>
 
−
 
 
−
]]
 
−
======Slide 048======
 
−
[[Image:L21_s048.jpg|frame|none|Lecture 21, Slide 048<br>
 
−
 
 
−
]]
 
−
======Slide 049======
 
−
[[Image:L21_s049.jpg|frame|none|Lecture 21, Slide 049<br>
 
−
 
 
−
]]
 
−
======Slide 050======
 
−
[[Image:L21_s050.jpg|frame|none|Lecture 21, Slide 050<br>
 
−
 
 
−
]]
 
−
======Slide 051======
 
−
[[Image:L21_s051.jpg|frame|none|Lecture 21, Slide 051<br>
 
  
 
]]
 
]]

Latest revision as of 15:29, 1 September 2007

Update Warning! This page has not been revised yet for the 2007 Fall term. Some of the slides may be reused, but please consider the page as a whole out of date as long as this warning appears here.

 

 


(Previous lecture) ... (Next lecture)

Comparative Genomics

...


Lecture Slides

Slide 001
Lecture 19, Slide 001
Slide 002
Lecture 19, Slide 002
Slide 003
Lecture 19, Slide 003
Slide 004
Lecture 19, Slide 004
Slide 005
Lecture 19, Slide 005
Slide 006
Lecture 19, Slide 006
Slide 007
Lecture 19, Slide 007
Slide 008
Lecture 19, Slide 008
Slide 009
Lecture 19, Slide 009
Slide 010
Lecture 19, Slide 010
Slide 011
Lecture 19, Slide 011
Slide 012
Lecture 19, Slide 012
Slide 013
Lecture 19, Slide 013
Slide 014
Lecture 19, Slide 014
Slide 015
Lecture 19, Slide 015
Slide 016
Lecture 19, Slide 016
Slide 017
Lecture 19, Slide 017
Slide 018
Lecture 19, Slide 018
Slide 019
Lecture 19, Slide 019
Slide 020
Lecture 19, Slide 020
Slide 021
Lecture 19, Slide 021
Slide 022
Lecture 19, Slide 022
Slide 023
Lecture 19, Slide 023
Slide 024
Lecture 19, Slide 024
Slide 025
Lecture 19, Slide 025
Slide 026
Lecture 19, Slide 026
Slide 027
Lecture 19, Slide 027
Slide 028
Lecture 19, Slide 028
Slide 029
Lecture 19, Slide 029
Slide 030
Lecture 19, Slide 030
Retrieved from "http://steipe.biochemistry.utoronto.ca/abc/index.php?title=Lecture_19&oldid=2862"