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| − | Welcome to the BCH441 Course Wiki, our tool to coordinate information, activities and projects.
| + | #REDIRECT [[Bioinformatics_Main_Page]] |
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| − | You can browse all pages on this site, however only users with a login account can edit or contribute or edit material.
| + | {{Vspace}} |
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| − | <small>If you are here because you are interested in general aspects of bioinformatics or computational biology, you may want to review the [http://en.wikipedia.org/wiki/Bioinformatics Wikipedia article on bioinformatics], or visit [http://wikiomics.org/wiki/Main_Page Wikiomics]. Contact boris.steipe(at)utoronto.ca with any questions you may have.</small> | + | <div id="BIO"> |
| | + | <div class="b1" style="padding-left:7%;"> |
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| − | == Organization ==
| + | <br/> |
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| − | '''The first lecture of the 2006 Fall term will be held Sept. 11, 12:00.'''
| + | <div style="font-size:150%;font-weight:bold;"> |
| | + | [[Bioinformatics_Main_Page|<span style="color:#FFFFFF;">A B C</span>]] |
| | + | </div> |
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| − | ;Dates | + | [[Bioinformatics_Main_Page|<span style="color:#FFFFFF;">Applying Bioinformatics Concepts</span>]] |
| − | :Monday and Thursday, 12:00 to 13:00
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| − | :<small>A tutorial session for Bioinformatics and Computational Biology Specialists will be offered Mondays, from 13:00 to 14:00.</small>
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| − | ;Location | + | <div style="font-size:50%;font-weight:bold;"> |
| − | :MSB 2173 | + | [[Bioinformatics_Main_Page|<span style="color:#FFFFFF;">Boris Steipe (2006 – 2020)</span>]] |
| | + | </div> |
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| − | See the [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Course Web page] for information.
| + | <br/> |
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| − | == Lecture Schedule ==
| + | </div> |
| − | <small>(This is a preliminary schedule and changes may be made as the course progresses.)</small>
| + | </div> |
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| − | <ol start="1">
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| − | <li>[[Lecture_01|Organisation and Orientation]] (Boris, Monday, Sept. 11)
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| − | </ol>
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| − | | |
| − | ;Sequences
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| − | <ol start="2">
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| − | <li>[[Lecture_02|The Sequence Abstraction]] (Boris, Thursday, Sept. 14)
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| − | <li>[[Lecture_03|Sequence Properties]] (Boris, Monday, Sept. 18)
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| − | <li>[[Lecture_04|Sequence Analysis]] (Boris, Thursday, Sept. 21)
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| − | <li>[[Lecture_05|Homology I: the principles]] (Boris, Monday, Sept. 25)
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| − | <li>[[Lecture_06|Homology II: Sequence Alignment]] (Boris, Thursday, Sept. 28)
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| − | </ol>
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| − | ;Structures
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| − | <ol start="7">
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| − | <li>[[Lecture_07|Protein Structure Databases]] (Boris, Monday, Oct. 2)
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| − | <li>[[Lecture_08|Structural Domains]] (Boris, Thursday, Oct. 5)
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| − | <li>[[Lecture_09|Interpreting Protein Structure]] (Boris, Monday, Oct. 9)
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| − | <li>[[Lecture_10|Homology Modeling]] (Boris, Thursday, Oct. 12)
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| − | <li>[[Lecture_11|Protein Structure Prediction]] (Boris, Monday, Oct. 16)
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| − | <li>[[Lecture_12|Multiple Sequence Alignment]] (Boris, Thursday, Oct. 19)
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| − | </ol> | |
| − | ;Genomes
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| − | <ol start="13">
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| − | <li>[[Lecture_13|Genome Sequencing]] (John, Monday, Oct. 23)
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| − | <li>[[Lecture_14|Genomes]] (John, Thursday, Oct. 26)
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| − | <li>[[Lecture_15|Functional Annotation]] (Shoshana, Monday, Oct. 30)
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| − | <li>[[Lecture_16|Fast Sequence Database searches]] (Boris, Thursday, Nov. 2)
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| − | </ol> | |
| − | ;Evolution
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| − | <ol start="17">
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| − | <li>[[Lecture_17|Phylogenetic Analysis]] (Boris, Monday, Nov. 6)
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| − | <li>[[Lecture_18|Clinical Genomics]] (Boris, Thursday, Nov. 9)
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| − | <li>[[Lecture_19|Comparative Genomics]] (John, Monday, Nov.13)
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| − | </ol>
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| − | ;Systems
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| − | <ol start="20">
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| − | <li>[[Lecture_20|Expression Analysis]] (Tim Hughes?, Thursday, Nov. 16)
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| − | <li>[[Lecture_21| Proteomics]] (Andrew Emili?, Monday, Nov. 20)
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| − | <li>[[Lecture_22|Gene regulation]] (Shoshana, Thursday, Nov. 23)
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| − | <li>[[Lecture_23|Machine Learning: Classification and Clustering]] (Shoshana, Monday, Nov. 27)
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| − | <li>[[Lecture_24|Interaction Databases]] (Shoshana, Thursday, Nov. 30)
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| − | <li>[[Lecture_25|Pathways and Networks]] (Gary Bader, Monday, Dec. 4)
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| − | <li>[[Lecture_26|Computational Systems Biology]] (John, Thursday, Dec. 8)
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| − | </ol>
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| − | | |
| − | == Assignments ==
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| − | <br>
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| − | *[[Assignment_1|'''First Assignment''' - Databases and Molecular Models]]
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| − | *[[Assignment_2|'''Second Assignment''' - Search, Retrieve and Annotate]]
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| − | *[[Assignment_3|'''Third Assignment''' - Multiple Sequence Alignment]]
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| − | *[[Assignment_4|'''Fourth Assignment''' - Phylogenetic Analysis]]
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| − | *[[Assignment_5|'''Fifth Assignment''' - Homology Modeling]]
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| − | *[[Assignment_6|'''Sixth Assignment''' - Patterns, Regulons and Systems]]
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| − | | |
| − | ==In depth...==
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| − | | |
| − | * [[Mutation Data Matrices]]
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| − | * [[Stereo Vision]]
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| − | | |
| − | == Resources ==
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| − | | |
| − | '''Course Wiki'''
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| − | *[[Help:Introduction|Introduction:]] Concept and contents of the Course Wiki
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| − | *[[Soapbox]]: A page to commmunicate. Do you want to leave a message? Alert the course members? Voice an opinion? Praise or flame? Use this page.
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| − | *[[Help:Editing| Editing:]] Editing principles and Wiki markup syntax for the Course Wiki pages
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| − | *[[Sandbox]]: A page for your editing experiments. Content added to this page will not stay permanently.
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| − | *[[Feedback]]: Share your views on the course, suggest improvements.
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| − | '''Course Web'''
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| − | *The [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Course Web site].
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