Difference between revisions of "BCB420 Week02 Tasks"
Jump to navigation
Jump to search
m (→In Class) |
m (→In Class) |
||
| Line 43: | Line 43: | ||
** Development (TDD, Literate Development) | ** Development (TDD, Literate Development) | ||
** Testing (Unit testing, Integration testing) | ** Testing (Unit testing, Integration testing) | ||
| + | |||
| + | |||
| + | * R Package - Latex tutorial (TBD) | ||
| + | * '''github''' tutorial (TBD) | ||
Revision as of 20:06, 17 January 2015
Week 2 Tasks
In Class
- Questions
- Quiz 1 and pickup
- Explore system definitions and system discovery processes in submitted papers.
- Discuss data relationships for functional annotation
- Coexpression
- Perturbation response (chemogenomics)
- Interaction - physical and genetic
- Similar genomic context
- Gene fusion/fission events
- Homology
- Structure
- Colocation
- Literature
- GO annotation
- KEGG, Biocyc - other regulatory and metabolic pathways
- First principles from systems theory (???)
- Define Project
- Objectives
- Scope
- Workflow
- Milestones for preparation phases I - III
- Work packages
- Discuss Development topics
- Habits (Projects, IDE and debugging, Version control)
- Collaboration (Wiki, Git, Etherpad)
- Development (TDD, Literate Development)
- Testing (Unit testing, Integration testing)
- R Package - Latex tutorial (TBD)
- github tutorial (TBD)
For next week
- Work through R Studio development tutorial (TBD)
- Work through github tutorial (TBD)
- Complete project plan
- Contribute to quiz questions
- More ... TBD
