Difference between revisions of "BCB420 Week02 Tasks"

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* Questions

Revision as of 19:07, 14 January 2015

Week 2 Tasks


Lecture
  • Questions
  • Quiz 1 and pickup

  • Explore system definitions and system discovery processes in submitted papers.
  • Discuss data relationships for functional annotation
    • Coexpression
    • Perturbation response (chemogenomics)
    • Interaction - physical and genetic
    • Similar genomic context
    • Gene fusion/fission events
    • Homology
    • Structure
    • Colocation
    • Literature
    • GO annotation
    • KEGG, Biocyc - other regulatory and metabolic pathways
    • First principles from systems theory (???)

  • Define Class Project
    • Objectives
    • Scope
    • Workflow
    • Milestones
    • Work packages

  • Discuss
    • Collaboration
    • Development
    • Testing
    • Version control

For next week
  • Work through R Studio development tutorial (TBD)
  • Work through github tutorial (TBD)
  • Complete project plan
  • Contribute to quiz questions
  • More ... TBD