Difference between revisions of "BIO Reference data"
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Revision as of 18:56, 1 December 2014
Reference data
Annotated links to reference data for Bioinformatics course assignments.
A reference annotation of the Saccharomyces cerevisiae Mbp1 protein sequence that integrates annotation sources we encounter throughout the course.
Explanation and definition for the "reference species" we use for the course.
- Reference APSES domain sequences (reference species)
- Reference APSES domain sequences (reference species)
- Reference alignment for APSES domains (MUSCLE, reference species)
- Reference alignment for APSES domains (MUSCLE, reference species)
A phylogentic tree for all APSES domains found in the reference fungi.
All APSES domains from APSES domain proteins in saccharomyces cerevisiae - annotated.
- Reference alignment for APSES domain proteins (PSI-BLAST)
- Reference alignment for APSES domain proteins (PSI-BLAST)
A multiple sequence alignment for orthologues (by RBM) to saccharomyces cerevisiae Mbp1 - computed with MUSCLE.
A multiple sequence alignment for orthologues (by RBM) to saccharomyces cerevisiae Mbp1 - computed with T-COFFEE.