Difference between revisions of "Multiple Sequence Alignment"
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− | + | Multiple Sequence Alignment | |
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− | + | MSA: Multiple sequence alignments | |
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− | + | __TOC__ | |
− | Multiple Sequence Alignment | + | |
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− | + | ==Introductory reading== | |
− | + | <section begin=reading /> | |
− | + | Caution: 2005 article. | |
− | + | {{#pmid: 15963889}} | |
− | + | <section end=reading /> | |
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− | + | ==Contents== | |
− | + | {{PDFlink|[http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/resources/13-Homology_IV_MSA.pdf Multiple Sequence Alignment]}} - Lecture by Boris Steipe. BCH441 - 2011<br /> | |
− | + | {{PDFlink|[[Media:N-Nursimulu_BCB410_2011_MSA-Presentation.pdf|MSA]]}} - Presentation by Nirvana Nursimulu, BCB410 - 2011 | |
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==Exercises== | ==Exercises== | ||
− | < | + | <section begin=exercises /> |
− | + | {{PDFlink|[[Media:N-Nursimulu_BCB410_2011_MSA-Exercises.pdf|Exercises]]}} - by Nirvana Nursimulu, BCB410 - 2011 | |
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− | + | ==Notes== | |
− | + | <references /> | |
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− | + | ==Further reading and resources== | |
− | + | <div class="reference-box">Methods in Molecular Biology <br /> | |
− | + | [http://link.springer.com/book/10.1007/978-1-62703-646-7 '''Multiple Sequence Alignment Methods''']<br /> | |
− | + | Springer (2014)</div> | |
− | + | {{#pmid: 24222208}} | |
− | + | {{#pmid: 24170400}} | |
− | + | {{#pmid: 21979275}} | |
− | + | {{#pmid: 21465564}} | |
− | + | {{#pmid: 15318951}} | |
− | + | {{#pmid: 18372315}} | |
− | + | {{#pmid: 19648142}} | |
− | + | {{#pmid: 22536955}} | |
− | + | <!-- {{#pmid: 19645596}} --> | |
− | [[ | + | <!-- {{WWW|WWW_UniProt}} --> |
− | + | <!-- <div class="reference-box">[http://www.ncbi.nlm.nih.gov]</div> --> | |
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− | + | [[Category:Applied_Bioinformatics]] | |
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Latest revision as of 22:38, 15 November 2014
Multiple Sequence Alignment
This page is a placeholder, or under current development; it is here principally to establish the logical framework of the site. The material on this page is correct, but incomplete.
MSA: Multiple sequence alignments
Introductory reading
Caution: 2005 article.
Wallace et al. (2005) Multiple sequence alignments. Curr Opin Struct Biol 15:261-6. (pmid: 15963889) |
Contents
Multiple Sequence Alignment - Lecture by Boris Steipe. BCH441 - 2011
MSA - Presentation by Nirvana Nursimulu, BCB410 - 2011
Exercises
Exercises - by Nirvana Nursimulu, BCB410 - 2011
Further reading and resources
Methods in Molecular Biology
Springer (2014)
Springer (2014)
Kim & Ma (2014) PSAR-align: improving multiple sequence alignment using probabilistic sampling. Bioinformatics 30:1010-2. (pmid: 24222208) |
Roshan (2014) Multiple sequence alignment using Probcons and Probalign. Methods Mol Biol 1079:147-53. (pmid: 24170400) |
Taly et al. (2011) Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures. Nat Protoc 6:1669-82. (pmid: 21979275) |
Peng & Xu (2011) A multiple-template approach to protein threading. Proteins 79:1930-9. (pmid: 21465564) |
Edgar (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. (pmid: 15318951) |
Katoh & Toh (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinformatics 9:286-98. (pmid: 18372315) |
Kemena & Notredame (2009) Upcoming challenges for multiple sequence alignment methods in the high-throughput era. Bioinformatics 25:2455-65. (pmid: 19648142) |
Chang et al. (2012) Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee. BMC Bioinformatics 13 Suppl 4:S1. (pmid: 22536955) |