User:Boris

Boris Steipe  (course coordinator for BCH441)

Medical Sciences Building, Room 5368

Toronto, Ontario      M5S 1A8

T: 416-946-7741

E: boris.steipe@utoronto.ca

         

Pages under development

• Cargo Cult Bioinformatics
• VMD tutorial
• R tutorial
• Stereo Vision tutorial
• User:Boris/Temp

Must make note to alert students who run LINUX boxes that some assignment tasks can be conveniently Perlified.

Additional CSB Topics

http://www.elsevier.com/wps/find/bookdescription.cws_home/707460/description

• Elsevier - Introducing Computational Systems Biology
• Elsevier - Enabling Information and Integration Technologies for Systems Biology:
  • Elsevier - Databases for Systems Biology.
  • Elsevier - Natural Language Processing and Ontology-enhanced Biomedical Literature Mining for Systems Biology
  • Elsevier - Integrated Imaging Informatics
  • Elsevier - Simpathica: A Computational Systems Biology Tool within the Valis Bioinformatics Environment
  • Elsevier - Standards, Platforms and Applications
• Elsevier - Foundations of Biochemical Network Analysis and Modeling
  • Elsevier - Introduction to Computational Models of Biochemical Reaction Networks
  • Elsevier - Biological Foundations of Signal Transduction and the Systems Biology Perspective
  • Elsevier - Reconstruction of Metabolic Network from Genome Information and Its Structural and Functional Analysis
  • Elsevier - Integrated Regulatory and Metabolic Models
• Elsevier - Computer Simulations of Dynamic Networks
  • Elsevier - A Discrete Approach to Network Modeling
  • Elsevier - Gene Networks: Estimation, Modeling and Simulation
  • Elsevier - Computational models for circadian rhythms: Deterministic versus stochastic approaches
• Elsevier - Multi-Scale Representations of Cells and Emerging Phenotypes
  • Elsevier - Multistability and Multicellularity: Cell Fates as High-dimensional Attractors of Gene Regulatory Networks
  • Elsevier - Spatio-Temporal Systems Biology
  • Elsevier - Cytomics—from cell states to predictive medicine
  • Elsevier - The IUPS Physiome Project: Progress and Plans.

Bioinformatics

	Biological foundations	Data	Analysis	Interpretation
Sequences
Structures
Evolution
Systems